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Update contamination.py

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Godwin N. Ani 2025-07-09 13:59:28 -04:00 committed by GitHub
parent 586a9e0c63
commit 99647c87bc
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PTL2/Scripts/contamination.py
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@ -478,7 +478,7 @@ def run(params):
os.system('rm -r ' + params.output + '/Output/Intermediate/IQTree/*') os.system('rm -r ' + params.output + '/Output/Intermediate/IQTree/*')
elif params.cl_tree_method == 'raxml': elif params.cl_tree_method == 'raxml':
os.system('rm -r ' + params.output + '/Output/Intermediate/RAxML/*') os.system('rm -r ' + params.output + '/Output/Intermediate/RAxML/*')
trees.run(params)
#if 'iqtree' in params.cl_tree_method: #if 'iqtree' in params.cl_tree_method:
#os.system('rm -r ' + params.output + '/Output/Intermediate/IQTree/*') #os.system('rm -r ' + params.output + '/Output/Intermediate/IQTree/*')