108 Commits

Author	SHA1	Message	Date
Katzlab	9074a7a9bd	Delete PTL1/README.md	2024-08-09 10:06:05 -04:00
Auden Cote-L'Heureux	2b34d542a0	Fixing OG seqid-splitting error in 3_AssignOGs.py	2024-05-02 14:17:45 -04:00
Auden Cote-L'Heureux	4b934763da	Fixing OG seqid-splitting error in 3_AssignOGs.py	2024-05-02 14:11:31 -04:00
Godwin Ani	b4d92dec13	Fixed blast hits	2024-04-26 14:25:37 -04:00
Godwin Ani	a70558b880	Fixed error with blast hits	2024-04-26 14:24:36 -04:00
Godwin Ani	bbe97c5888	Add files via upload	2024-04-26 14:23:55 -04:00
Auden Cote-L'Heureux	b8a68098f3	Fixing assembled transcript overwrite issue in 7b	2024-03-18 10:16:31 -04:00
Auden Cote-L'Heureux	1dcb7f05dd	Delete PTL1/Transcriptomes/Scripts/7b_SummaryStats.py	2024-03-18 10:15:58 -04:00
Auden Cote-L'Heureux	93b328306a	Halfway done with fix to wrapper.py	2024-02-16 14:10:14 -05:00
Auden Cote-L'Heureux	384dd72125	Adding check to 4_InFrameStopCodonEstimator.py	2024-02-16 14:06:06 -05:00
Auden Cote-L'Heureux	835104592f	Updating headers in CheckSetup.py	2024-01-26 11:47:22 -05:00
Auden Cote-L'Heureux	bf669310fd	Updating header and Hook name check CheckSetup.py	2024-01-26 11:46:06 -05:00
Auden Cote-L'Heureux	df54de3589	Updating header in wrapper.py	2024-01-26 11:42:05 -05:00
Auden Cote-L'Heureux	a3a49f39d2	Updating header in CUB.py	2024-01-26 11:41:05 -05:00
Auden Cote-L'Heureux	f3116ff874	Updating header in 5b_SummaryStats.py	2024-01-26 11:40:30 -05:00
Auden Cote-L'Heureux	427f9f7125	Updating header in 4_CountOGsDiamond.py	2024-01-26 11:38:42 -05:00
Auden Cote-L'Heureux	887d136f5b	Updating header in 5a_FinalizeName.py	2024-01-26 11:37:19 -05:00
Auden Cote-L'Heureux	612e427b4a	Updating header in 4_CountOGsDiamond.py	2024-01-26 11:36:32 -05:00
Auden Cote-L'Heureux	fa20addc6e	Updating header in 3_GCodeTranslate.py	2024-01-26 11:35:25 -05:00
Auden Cote-L'Heureux	7e5e739574	Updating header in 2_GCodeEval.py	2024-01-26 11:30:22 -05:00
Auden Cote-L'Heureux	511f0e7766	Updating header in 1_RenameCDS.py	2024-01-26 11:26:00 -05:00
Auden Cote-L'Heureux	b6954c127a	Annotating wrapper.py	2024-01-26 11:17:11 -05:00
Auden Cote-L'Heureux	48c3b08b53	Updating headers in CUB.py	2024-01-26 11:07:11 -05:00
Auden Cote-L'Heureux	6a2e815378	Updating header in 7b_SummaryStats.py	2024-01-26 11:05:28 -05:00
Auden Cote-L'Heureux	6008160934	Updating headers in 7a_FinalizeName.py	2024-01-26 11:01:01 -05:00
Auden Cote-L'Heureux	fcd86bfebf	Updating headers in 6_FilterPartials.py	2024-01-26 10:43:26 -05:00
Auden Cote-L'Heureux	0167e3da16	Updating headers in 6_FilterPartials.py	2024-01-26 10:43:04 -05:00
Auden Cote-L'Heureux	a33941b4ed	Updating headers in 5_GCodeTranslate.py	2024-01-26 10:39:33 -05:00
Katzlab	3ec22ac4ac	updating header	2024-01-20 16:19:28 -05:00
Katzlab	5c6573e0f9	Updating header	2024-01-20 16:18:22 -05:00
Auden Cote-L'Heureux	4b1197eaee	Headers in 4_InFrameStopCodonEstimator.py	2024-01-20 13:58:41 -05:00
Auden Cote-L'Heureux	4dd54cf87a	Headers in 4_InFrameStopCodonEstimator.py	2024-01-20 13:57:29 -05:00
Auden Cote-L'Heureux	9b02c0074c	Headers in 3_AssignOGs.py	2024-01-20 13:50:41 -05:00
Auden Cote-L'Heureux	559eee63f9	Headers in 3_AssignOGs.py	2024-01-20 13:49:52 -05:00
Auden Cote-L'Heureux	ff9a419c4e	Updating annotations 2b_Identify_Proks.py	2024-01-16 14:32:50 -05:00
Auden Cote-L'Heureux	c77e63eb74	Updating header in 2b_Identify_Proks.py	2024-01-16 14:32:26 -05:00
Auden Cote-L'Heureux	e3077b1caa	Updating header in 2a_Identify_rRNA.py	2024-01-16 14:10:53 -05:00
Auden Cote-L'Heureux	e78d73ca25	Updating header in 1a_TranscriptLengthFilter.py	2024-01-16 14:05:44 -05:00
Auden Cote-L'Heureux	c15e663773	Updating header in 1b_CrossPlateContamination.py	2024-01-16 14:04:06 -05:00
Auden Cote-L'Heureux	c12aa46cf5	Updating header in 1a_TranscriptLengthFilter.py	2024-01-16 13:53:18 -05:00
Auden Cote-L'Heureux	d90e67c266	Updating header in 2a_Identify_rRNA.py	2024-01-16 12:11:57 -05:00
Auden Cote-L'Heureux	229bd77cca	Annotating 1b_CrossPlateContamination.py	2024-01-16 12:07:32 -05:00
Auden Cote-L'Heureux	e9286e7d7a	Updating header in 1b_CrossPlateContamination.py	2024-01-16 11:55:23 -05:00
Auden Cote-L'Heureux	1bc56f2a52	Updating header in 1a_TranscriptLengthFilter.py	2024-01-16 11:53:01 -05:00
Auden Cote-L'Heureux	3d5cd6cebc	Updating header in 1a_TranscriptLengthFilter.py	2024-01-16 11:46:20 -05:00
Auden Cote-L'Heureux	bacb094028	Cleaning up length filter	2023-11-27 14:11:07 -05:00
Auden Cote-L'Heureux	0faa9f0b14	Fixing stop codon 1/3 length issue	2023-11-27 14:09:53 -05:00
Auden Cote-L'Heureux	842b229833	Rename 6_SummaryStats.py to 5b_SummaryStats.py	2023-11-10 10:21:35 -05:00
Auden Cote-L'Heureux	06e13e7caa	Rename 5_FinalizeName.py to 5a_FinalizeName.py	2023-11-10 10:21:24 -05:00
Auden Cote-L'Heureux	72660b742b	Adding CheckSetup.py to the Genomes	2023-10-30 17:18:56 -04:00