Auden Cote-L'Heureux
|
e3077b1caa
|
Updating header in 2a_Identify_rRNA.py
|
2024-01-16 14:10:53 -05:00 |
|
Auden Cote-L'Heureux
|
e78d73ca25
|
Updating header in 1a_TranscriptLengthFilter.py
|
2024-01-16 14:05:44 -05:00 |
|
Auden Cote-L'Heureux
|
c15e663773
|
Updating header in 1b_CrossPlateContamination.py
|
2024-01-16 14:04:06 -05:00 |
|
Auden Cote-L'Heureux
|
c12aa46cf5
|
Updating header in 1a_TranscriptLengthFilter.py
|
2024-01-16 13:53:18 -05:00 |
|
Auden Cote-L'Heureux
|
d90e67c266
|
Updating header in 2a_Identify_rRNA.py
|
2024-01-16 12:11:57 -05:00 |
|
Auden Cote-L'Heureux
|
229bd77cca
|
Annotating 1b_CrossPlateContamination.py
|
2024-01-16 12:07:32 -05:00 |
|
Auden Cote-L'Heureux
|
e9286e7d7a
|
Updating header in 1b_CrossPlateContamination.py
|
2024-01-16 11:55:23 -05:00 |
|
Auden Cote-L'Heureux
|
1bc56f2a52
|
Updating header in 1a_TranscriptLengthFilter.py
|
2024-01-16 11:53:01 -05:00 |
|
Auden Cote-L'Heureux
|
3d5cd6cebc
|
Updating header in 1a_TranscriptLengthFilter.py
|
2024-01-16 11:46:20 -05:00 |
|
Auden Cote-L'Heureux
|
bacb094028
|
Cleaning up length filter
|
2023-11-27 14:11:07 -05:00 |
|
Auden Cote-L'Heureux
|
fbac4f6b09
|
Add files via upload
|
2023-10-30 16:40:40 -04:00 |
|
Auden Cote-L'Heureux
|
b8ac13a0f0
|
Delete PTL1/Transcriptomes/Scripts/__pycache__ directory
|
2023-10-30 15:18:42 -04:00 |
|
Auden Cote-L'Heureux
|
a515a08c61
|
Fixing same contig/OG number bug in 6_FilterPartials.py
|
2023-10-06 10:41:29 -04:00 |
|
Auden Cote-L'Heureux
|
694ece4648
|
Typo
|
2023-10-02 12:03:27 -04:00 |
|
Auden Cote-L'Heureux
|
f4faf95555
|
Delete PTL1/Transcriptomes/Scripts/8_SummaryStats.py
|
2023-10-02 11:49:27 -04:00 |
|
Auden Cote-L'Heureux
|
adc96d1dbc
|
Delete PTL1/Transcriptomes/Scripts/7_FinalizeName.py
|
2023-10-02 11:49:20 -04:00 |
|
Auden Cote-L'Heureux
|
1ee6f5ceb6
|
Small changes, see description
- Default partial filter cov threshold is 20%
- Changed script names
- Made requirement of conspecific names file explicit when using XPC
|
2023-10-02 11:49:03 -04:00 |
|
Auden Cote-L'Heureux
|
b2e381e01d
|
Typo fix
|
2023-10-02 11:12:44 -04:00 |
|
Auden Cote-L'Heureux
|
4b934b8de2
|
Rename 4_InFrameStopCodonEsimator.py to 4_InFrameStopCodonEstimator.py
|
2023-10-02 11:11:49 -04:00 |
|
Auden Cote-L'Heureux
|
fa294909c5
|
Updates to script 6 filters & script names
|
2023-09-29 13:20:49 -04:00 |
|
Auden Cote-L'Heureux
|
f9d747ce38
|
Delete PTL1/Transcriptomes/Scripts/7_FinalizeName.py
|
2023-09-29 13:20:17 -04:00 |
|
Auden Cote-L'Heureux
|
5f28d4447f
|
Delete PTL1/Transcriptomes/Scripts/6b_update_cov_post_removepartials.py
|
2023-09-29 13:20:11 -04:00 |
|
Auden Cote-L'Heureux
|
eb3db88688
|
Delete PTL1/Transcriptomes/Scripts/6_FilterPartials.py
|
2023-09-29 13:20:05 -04:00 |
|
Auden Cote-L'Heureux
|
02ec29d737
|
Delete PTL1/Transcriptomes/Scripts/5_GCodeTranslate.py
|
2023-09-29 13:19:55 -04:00 |
|
Auden Cote-L'Heureux
|
0b6823d007
|
Delete PTL1/Transcriptomes/Scripts/4_InFrameStopFreq.py
|
2023-09-29 13:19:49 -04:00 |
|
Auden Cote-L'Heureux
|
6746899daa
|
Delete PTL1/Transcriptomes/Scripts/3_CountOGsDiamond.py
|
2023-09-29 13:19:43 -04:00 |
|
Auden Cote-L'Heureux
|
18981a792f
|
Delete PTL1/Transcriptomes/Scripts/2b_remove_Bact.py
|
2023-09-29 13:19:36 -04:00 |
|
Auden Cote-L'Heureux
|
b6f439e7d6
|
Delete PTL1/Transcriptomes/Scripts/2a_remove_rRNA.py
|
2023-09-29 13:19:30 -04:00 |
|
Auden Cote-L'Heureux
|
3e01100304
|
Delete PTL1/Transcriptomes/Scripts/1b_XSpeciesContaminationAgnes.py
|
2023-09-29 13:19:23 -04:00 |
|
Auden Cote-L'Heureux
|
67bbdd30b8
|
Delete PTL1/Transcriptomes/Scripts/1a_ContigFiltStats.py
|
2023-09-29 13:19:12 -04:00 |
|
Auden Cote-L'Heureux
|
7d54bb7416
|
New script 6 with revised length filtration
|
2023-09-18 10:06:36 -04:00 |
|
Auden Cote-L'Heureux
|
8ccb6eb9a7
|
Delete PTL1/Transcriptomes/Scripts/6_FilterPartials.py
|
2023-09-18 10:05:39 -04:00 |
|
Auden Cote-L'Heureux
|
59f82e826c
|
Small fix to 8_SummaryStats.py
|
2023-08-21 13:25:04 -04:00 |
|
Auden Cote-L'Heureux
|
b1bd9873af
|
Adding date to stats summary script outputs
|
2023-08-21 13:10:37 -04:00 |
|
Auden Cote-L'Heureux
|
a24a546ade
|
Fixing 4-fold family error in CUB.py
|
2023-08-21 12:47:14 -04:00 |
|
Auden Cote-L'Heureux
|
b08135e9b4
|
Removing matplotlib dependency from 8_SummaryStats.py
|
2023-08-04 15:05:10 -04:00 |
|
Auden Cote-L'Heureux
|
020993b04f
|
Delete scratch.py
|
2023-06-15 09:24:50 -04:00 |
|
Auden Cote-L'Heureux
|
7800d18957
|
Delete UnexpexctedShortStuffBlameXyrus.txt
|
2023-06-15 09:24:40 -04:00 |
|
Auden Cote-L'Heureux
|
c386268442
|
Delete PTL1.2831.out
|
2023-06-15 09:24:31 -04:00 |
|
Auden Cote-L'Heureux
|
1a70cae152
|
Add files via upload
|
2023-06-15 09:16:54 -04:00 |
|
Auden Cote-L'Heureux
|
69844a6d66
|
Add files via upload
|
2023-06-13 14:01:17 -04:00 |
|
Auden Cote-L'Heureux
|
6dc90e0d4c
|
Add files via upload
|
2023-06-12 13:31:51 -04:00 |
|
Auden Cote-L'Heureux
|
f4b7839ea9
|
Delete PTL1/Transcriptomes/Scripts directory
|
2023-06-12 13:31:06 -04:00 |
|
Katzlab
|
d59c79b149
|
PTL1
These are PTL1 scripts from ACL on Feb8. NOTE: These are WITHOUT databases..... these are at (Katzlab only) link here
https://drive.google.com/drive/folders/10n1GdTJqEOBg1nGA1hjxNHgaNZgmbwb5
|
2023-02-14 11:30:14 -05:00 |
|