58 Commits

Author	SHA1	Message	Date
Auden Cote-L'Heureux	6008160934	Updating headers in 7a_FinalizeName.py	2024-01-26 11:01:01 -05:00
Auden Cote-L'Heureux	fcd86bfebf	Updating headers in 6_FilterPartials.py	2024-01-26 10:43:26 -05:00
Auden Cote-L'Heureux	0167e3da16	Updating headers in 6_FilterPartials.py	2024-01-26 10:43:04 -05:00
Auden Cote-L'Heureux	a33941b4ed	Updating headers in 5_GCodeTranslate.py	2024-01-26 10:39:33 -05:00
Katzlab	3ec22ac4ac	updating header	2024-01-20 16:19:28 -05:00
Katzlab	5c6573e0f9	Updating header	2024-01-20 16:18:22 -05:00
Auden Cote-L'Heureux	4b1197eaee	Headers in 4_InFrameStopCodonEstimator.py	2024-01-20 13:58:41 -05:00
Auden Cote-L'Heureux	4dd54cf87a	Headers in 4_InFrameStopCodonEstimator.py	2024-01-20 13:57:29 -05:00
Auden Cote-L'Heureux	9b02c0074c	Headers in 3_AssignOGs.py	2024-01-20 13:50:41 -05:00
Auden Cote-L'Heureux	559eee63f9	Headers in 3_AssignOGs.py	2024-01-20 13:49:52 -05:00
Auden Cote-L'Heureux	ff9a419c4e	Updating annotations 2b_Identify_Proks.py	2024-01-16 14:32:50 -05:00
Auden Cote-L'Heureux	c77e63eb74	Updating header in 2b_Identify_Proks.py	2024-01-16 14:32:26 -05:00
Auden Cote-L'Heureux	e3077b1caa	Updating header in 2a_Identify_rRNA.py	2024-01-16 14:10:53 -05:00
Auden Cote-L'Heureux	e78d73ca25	Updating header in 1a_TranscriptLengthFilter.py	2024-01-16 14:05:44 -05:00
Auden Cote-L'Heureux	c15e663773	Updating header in 1b_CrossPlateContamination.py	2024-01-16 14:04:06 -05:00
Auden Cote-L'Heureux	c12aa46cf5	Updating header in 1a_TranscriptLengthFilter.py	2024-01-16 13:53:18 -05:00
Auden Cote-L'Heureux	d90e67c266	Updating header in 2a_Identify_rRNA.py	2024-01-16 12:11:57 -05:00
Auden Cote-L'Heureux	229bd77cca	Annotating 1b_CrossPlateContamination.py	2024-01-16 12:07:32 -05:00
Auden Cote-L'Heureux	e9286e7d7a	Updating header in 1b_CrossPlateContamination.py	2024-01-16 11:55:23 -05:00
Auden Cote-L'Heureux	1bc56f2a52	Updating header in 1a_TranscriptLengthFilter.py	2024-01-16 11:53:01 -05:00
Auden Cote-L'Heureux	3d5cd6cebc	Updating header in 1a_TranscriptLengthFilter.py	2024-01-16 11:46:20 -05:00
Auden Cote-L'Heureux	bacb094028	Cleaning up length filter	2023-11-27 14:11:07 -05:00
Auden Cote-L'Heureux	fbac4f6b09	Add files via upload	2023-10-30 16:40:40 -04:00
Auden Cote-L'Heureux	b8ac13a0f0	Delete PTL1/Transcriptomes/Scripts/__pycache__ directory	2023-10-30 15:18:42 -04:00
Auden Cote-L'Heureux	a515a08c61	Fixing same contig/OG number bug in 6_FilterPartials.py	2023-10-06 10:41:29 -04:00
Auden Cote-L'Heureux	694ece4648	Typo	2023-10-02 12:03:27 -04:00
Auden Cote-L'Heureux	f4faf95555	Delete PTL1/Transcriptomes/Scripts/8_SummaryStats.py	2023-10-02 11:49:27 -04:00
Auden Cote-L'Heureux	adc96d1dbc	Delete PTL1/Transcriptomes/Scripts/7_FinalizeName.py	2023-10-02 11:49:20 -04:00
Auden Cote-L'Heureux	1ee6f5ceb6	Small changes, see description ... - Default partial filter cov threshold is 20% - Changed script names - Made requirement of conspecific names file explicit when using XPC	2023-10-02 11:49:03 -04:00
Auden Cote-L'Heureux	b2e381e01d	Typo fix	2023-10-02 11:12:44 -04:00
Auden Cote-L'Heureux	4b934b8de2	Rename 4_InFrameStopCodonEsimator.py to 4_InFrameStopCodonEstimator.py	2023-10-02 11:11:49 -04:00
Auden Cote-L'Heureux	fa294909c5	Updates to script 6 filters & script names	2023-09-29 13:20:49 -04:00
Auden Cote-L'Heureux	f9d747ce38	Delete PTL1/Transcriptomes/Scripts/7_FinalizeName.py	2023-09-29 13:20:17 -04:00
Auden Cote-L'Heureux	5f28d4447f	Delete PTL1/Transcriptomes/Scripts/6b_update_cov_post_removepartials.py	2023-09-29 13:20:11 -04:00
Auden Cote-L'Heureux	eb3db88688	Delete PTL1/Transcriptomes/Scripts/6_FilterPartials.py	2023-09-29 13:20:05 -04:00
Auden Cote-L'Heureux	02ec29d737	Delete PTL1/Transcriptomes/Scripts/5_GCodeTranslate.py	2023-09-29 13:19:55 -04:00
Auden Cote-L'Heureux	0b6823d007	Delete PTL1/Transcriptomes/Scripts/4_InFrameStopFreq.py	2023-09-29 13:19:49 -04:00
Auden Cote-L'Heureux	6746899daa	Delete PTL1/Transcriptomes/Scripts/3_CountOGsDiamond.py	2023-09-29 13:19:43 -04:00
Auden Cote-L'Heureux	18981a792f	Delete PTL1/Transcriptomes/Scripts/2b_remove_Bact.py	2023-09-29 13:19:36 -04:00
Auden Cote-L'Heureux	b6f439e7d6	Delete PTL1/Transcriptomes/Scripts/2a_remove_rRNA.py	2023-09-29 13:19:30 -04:00
Auden Cote-L'Heureux	3e01100304	Delete PTL1/Transcriptomes/Scripts/1b_XSpeciesContaminationAgnes.py	2023-09-29 13:19:23 -04:00
Auden Cote-L'Heureux	67bbdd30b8	Delete PTL1/Transcriptomes/Scripts/1a_ContigFiltStats.py	2023-09-29 13:19:12 -04:00
Auden Cote-L'Heureux	7d54bb7416	New script 6 with revised length filtration	2023-09-18 10:06:36 -04:00
Auden Cote-L'Heureux	8ccb6eb9a7	Delete PTL1/Transcriptomes/Scripts/6_FilterPartials.py	2023-09-18 10:05:39 -04:00
Auden Cote-L'Heureux	8a2010d510	Delete PTL1/Transcriptomes/Output directory	2023-09-13 14:17:32 -04:00
Auden Cote-L'Heureux	59f82e826c	Small fix to 8_SummaryStats.py	2023-08-21 13:25:04 -04:00
Auden Cote-L'Heureux	b1bd9873af	Adding date to stats summary script outputs	2023-08-21 13:10:37 -04:00
Auden Cote-L'Heureux	a24a546ade	Fixing 4-fold family error in CUB.py	2023-08-21 12:47:14 -04:00
Auden Cote-L'Heureux	b08135e9b4	Removing matplotlib dependency from 8_SummaryStats.py	2023-08-04 15:05:10 -04:00
Auden Cote-L'Heureux	020993b04f	Delete scratch.py	2023-06-15 09:24:50 -04:00