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• 1814246c04
  Update wrapper.py main Godwin N. Ani 2025-09-23 16:05:44 -04:00
• 591e32d5e5
  Update wrapper.py Godwin N. Ani 2025-09-23 16:01:59 -04:00
• fbf51f815a
  Update run_eukphylo.sh Adri K. Grow 2025-09-19 12:19:51 -04:00
• ac84339565
  Update run_eukphylo.sh Adri K. Grow 2025-09-19 12:19:10 -04:00
• bdec8612ee
  Update run_eukphylo.sh Adri K. Grow 2025-09-19 11:46:14 -04:00
• db49d4965e
  Update run_eukphylo.sh Adri K. Grow 2025-09-18 15:46:48 -04:00
• f2d8fd9e6c
  Update wrapper_submit.sh Adri K. Grow 2025-09-04 11:21:53 -04:00
• fbaa61f23e
  Update wrapper_submit.sh Adri K. Grow 2025-09-04 11:21:17 -04:00
• 8222b6404e
  Update ReadMapping.py Adri K. Grow 2025-08-28 23:26:39 -04:00
• f5ca94b51c
  Update ReadMapping.py Adri K. Grow 2025-08-27 13:18:28 -04:00
• 033ed1237e
  Add files via upload Godwin N. Ani 2025-08-27 10:49:37 -04:00
• 4f400d61c8
  Update wrapper_submit.sh Adri K. Grow 2025-08-25 17:21:34 -04:00
• 692eabc6ad
  Update run_eukphylo.sh Adri K. Grow 2025-08-25 17:20:28 -04:00
• f17b43ffc9
  Update wrapper_submit.sh Adri K. Grow 2025-08-25 17:20:21 -04:00
• 12870b2007
  Update run_eukphylo.sh Adri K. Grow 2025-08-25 17:18:13 -04:00
• 10c4dda6b7
  Update run_eukphylo.sh Adri K. Grow 2025-08-25 17:15:31 -04:00
• 5bee8e55d2
  Update wrapper_submit.sh Godwin N. Ani 2025-08-25 17:05:56 -04:00
• a00e51523f
  Update wrapper_submit.sh Adri K. Grow 2025-08-25 11:49:11 -04:00
• cb71db1f72
  Update wrapper_submit.sh Adri K. Grow 2025-08-25 11:47:10 -04:00
• e785532921
  Update wrapper_submit.sh Adri K. Grow 2025-08-25 11:42:05 -04:00
• c042f62249
  Update wrapper_submit.sh Godwin N. Ani 2025-08-25 10:59:29 -04:00
• efebf01057
  Update wrapper_submit.sh Godwin N. Ani 2025-08-25 10:58:25 -04:00
• 0fc18547d6
  Update ReadMapping.py Adri K. Grow 2025-08-22 13:16:37 -04:00
• fee7125729
  Update ProcessAndRenameAssembledData.py Adri K. Grow 2025-08-21 10:40:08 -04:00
• c92cfb1b19
  Update ReadMapping.py Adri K. Grow 2025-08-18 14:13:11 -04:00
• 5fcd3b937e
  Update CladeGrabbing.py Adri K. Grow 2025-08-18 10:56:17 -04:00
• 20d3926f10
  Update CladeGrabbing.py Adri K. Grow 2025-08-18 10:54:25 -04:00
• 873862adbc
  Update guidance.py GiuliaRibeiro 2025-08-07 09:53:42 -04:00
• 333a7bc063
  Update run_eukphylo.sh Godwin N. Ani 2025-07-29 17:43:37 -04:00
• b582321c3a
  Update guidance.py Godwin N. Ani 2025-07-17 14:47:39 -04:00
• 7a2320284a
  Update utils.py Godwin N. Ani 2025-07-17 14:46:52 -04:00
• f53b6926c5
  Add files via upload Godwin N. Ani 2025-07-17 11:42:28 -04:00
• 399811662c
  Delete PTL2/Black_and_Grey_list_GuidanceSisSubsisters_RemovedSeq_Conserved_PTLms_June2024_ML (1).txt Godwin N. Ani 2025-07-17 11:42:19 -04:00
• a05f94c9fa
  Add files via upload Godwin N. Ani 2025-07-17 11:41:09 -04:00
• 343496b598
  Delete PTL2/Black_and_Grey_list_GuidanceSisSubsisters_RemovedSeq_Conserved_PTLms_June2024_ML.txt Godwin N. Ani 2025-07-17 11:40:56 -04:00
• 3f9ef410a7
  Rename Black_and_Grey_list_GuidanceSisSubsisters_RemovedSeq_Conserved_PTLms_June2024_ML (1).txt to Black_and_Grey_list_GuidanceSisSubsisters_RemovedSeq_Conserved_PTLms_June2024_ML.txt Godwin N. Ani 2025-07-17 11:31:34 -04:00
• fb5353fe96
  Blacklist_and_greylist Godwin N. Ani 2025-07-17 11:31:09 -04:00
• 4e63a165b7
  Update contamination.py v1.0 Godwin N. Ani 2025-07-09 13:59:38 -04:00
• 99647c87bc
  Update contamination.py Godwin N. Ani 2025-07-09 13:59:28 -04:00
• 586a9e0c63
  Update CladeGrabbing.py Adri K. Grow 2025-07-08 07:54:58 -04:00
• aec7f6caf9
  Update ColorByClade.py Katzlab 2025-07-01 16:18:54 -04:00
• 5486c4289b
  Add files via upload Godwin N. Ani 2025-07-01 11:11:21 -04:00
• c079b58d87
  Update wrapper_submit.sh Adri K. Grow 2025-06-27 13:33:22 -04:00
• d16560f747
  Update wrapper_submit.sh Adri K. Grow 2025-06-27 13:29:37 -04:00
• 0b1feed651
  Update ProcessAndRenameAssembledData.py Adri K. Grow 2025-06-27 12:39:05 -04:00
• d33ac6c2c3
  Update Trim_Reads.py Adri K. Grow 2025-06-26 15:55:15 -04:00
• ef6b633de7
  Update guidance.py Katzlab 2025-06-18 08:43:19 -04:00
• c891188eec
  Update guidance.py Katzlab 2025-06-18 08:37:19 -04:00
• c767bd9a0a
  Update Trim_Reads.py Adri K. Grow 2025-06-16 11:25:08 -04:00
• c84f3387ff
  Update Trim_Reads.py Adri K. Grow 2025-06-13 12:41:35 -04:00
• 3e4f4987a2
  Update Trim_Reads.py Adri K. Grow 2025-06-13 12:41:17 -04:00
• e7facbf6e7
  Update PlotComps.r Katzlab 2025-06-12 04:27:20 -04:00
• 3fe4ee3ae5
  Update CUB.py Katzlab 2025-06-12 04:25:47 -04:00
• d81926f179
  Update wrapper_submit.sh Adri K. Grow 2025-06-12 00:44:27 -04:00
• 6cb8a7b98a
  Update wrapper_submit.sh Adri K. Grow 2025-06-11 23:46:58 -04:00
• fdf525d433
  Add files via upload GiuliaRibeiro 2025-06-11 10:17:50 -04:00
• 8ccde9800a
  Update wrapper_submit.sh Katzlab 2025-06-02 16:36:02 -04:00
• d32fbcc4e8
  Update guidance.py Adri K. Grow 2025-06-02 11:23:34 -04:00
• ff249d7973
  Update trees.py Docker Godwin N. Ani 2025-05-06 11:08:50 -04:00
• 1d7d8b9e91
  Update guidance.py Godwin N. Ani 2025-05-06 11:07:30 -04:00
• 9e4d605bff
  Update trees.py GiuliaRibeiro 2025-04-18 13:01:33 -04:00
• d01086e017
  Update headers Auden Cote-L'Heureux 2025-04-18 09:09:24 -04:00
• e0930c5748
  Update header for new guidance version Auden Cote-L'Heureux 2025-04-18 09:09:03 -04:00
• cc7a66b179
  Update README.md to make links more clear Auden Cote-L'Heureux 2025-04-18 08:57:06 -04:00
• 16a96f137e
  Update guidance_path param Auden Cote-L'Heureux 2025-04-18 08:48:42 -04:00
• fa1f50e6f0
  Update guidance_path param Auden Cote-L'Heureux 2025-04-18 08:45:40 -04:00
• 9239110401
  Updating guidance_path param Auden Cote-L'Heureux 2025-04-18 08:45:23 -04:00
• dc813c351a
  Update utils.py Auden Cote-L'Heureux 2025-04-18 08:44:21 -04:00
• e452ae0117
  Making the --concat_target_taxa argument optional Auden Cote-L'Heureux 2025-04-15 16:23:19 -04:00
• 2651fe7b89
  Update utils.py Godwin N. Ani 2025-04-07 14:56:38 -04:00
• c92f490837
  Update contamination.py Godwin N. Ani 2025-04-07 12:36:17 -04:00
• 7074a1e71a
  Update contamination.py Godwin N. Ani 2025-04-07 12:24:56 -04:00
• 95b26b1880
  Update contamination.py Godwin N. Ani 2025-04-07 12:20:56 -04:00
• fba84adb17
  Update contamination.py Godwin N. Ani 2025-04-07 11:54:36 -04:00
• 8c7a1a2eed
  Update contamination.py Godwin N. Ani 2025-04-07 11:29:15 -04:00
• e8aa277e44
  Update contamination.py Godwin N. Ani 2025-04-07 11:20:34 -04:00
• 998ce5bd9c
  Update contamination.py Godwin N. Ani 2025-04-07 11:06:32 -04:00
• 4da74765ee
  Add files via upload Adri K. Grow 2025-04-06 23:36:01 -04:00
• 6a9ae23e8c
  Delete Utilities/for_fastas/Cluster.py Adri K. Grow 2025-04-06 23:35:47 -04:00
• 0cfea8840c
  Update contamination.py Godwin N. Ani 2025-04-04 15:28:08 -04:00
• d161957d86
  Taking out 'both' option of contamination loop Auden Cote-L'Heureux 2025-03-28 15:40:58 -04:00
• 4a47f5c4c9
  Update Dockerfile.txt Godwin N. Ani 2025-03-25 17:49:21 -04:00
• 60635820fd
  Update trees.py Godwin N. Ani 2025-03-25 17:41:18 -04:00
• 4e52430af7
  Update guidance.py Godwin N. Ani 2025-03-25 12:35:43 -04:00
• 2fac05be1d
  Update guidance.py Godwin N. Ani 2025-03-25 12:35:22 -04:00
• dedc315f24
  Update guidance.py Godwin N. Ani 2025-03-25 12:16:55 -04:00
• fdea233780
  Update guidance.py Godwin N. Ani 2025-03-25 12:16:02 -04:00
• 102bb533bb
  Update utils.py Godwin N. Ani 2025-03-25 10:43:05 -04:00
• 95d4b0771e
  Update guidance.py Godwin N. Ani 2025-03-25 10:42:23 -04:00
• d7577022c4
  Update CladeSizes.py Godwin N. Ani 2025-03-24 15:01:48 -04:00
• cf0948023d
  Update guidance.py Godwin N. Ani 2025-03-24 10:17:36 -04:00
• 04c41a6f44
  Update guidance.py Godwin N. Ani 2025-03-24 10:16:53 -04:00
• c39df0e39d
  Update utils.py Godwin N. Ani 2025-03-24 10:11:35 -04:00
• 9b6b28ac03
  Update Cluster.py Godwin N. Ani 2025-03-21 13:48:23 -04:00
• 31cb84fa28
  Update Cluster.py Godwin N. Ani 2025-03-21 13:45:49 -04:00
• a2ec0edb37
  Update Cluster.py Godwin N. Ani 2025-03-21 13:43:08 -04:00
• 3d8cd2e221
  Update Cluster.py Godwin N. Ani 2025-03-21 13:42:57 -04:00
• e18b3dfe0c
  Update Cluster.py Godwin Ani 2025-03-21 13:22:21 -04:00
• 8487f1d836
  Updating headers in 6_FilterPartials.py Auden Cote-L'Heureux 2025-03-19 09:20:37 -04:00
• de2be6f436
  Update README.md Godwin Ani 2025-03-18 19:01:23 -04:00