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Updated EukPhylo QuickStart (markdown)

Godwin Ani 2025-03-05 16:28:38 -05:00
parent 9bcc331923
commit 0c65fdda6f
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EukPhylo-QuickStart.md

@ -5,20 +5,15 @@
The [docker file](https://github.com/Katzlab/EukPhylo/blob/Docker/PTL2/Dockerfile) can be executed with:
```bash
cd EukPhylo
# Build the container
docker build -t Dockerfile . --tag MyEuk:1
# Get the container IMAGE_ID
docker image list
docker build -f Dockerfile.txt . --tag eukphylo:1
# Current command is:
docker run -it \
--mount type=bind,src=$(pwd)/databases,dst=/Databases \
--mount type=bind,src=$(pwd)/input_data,dst=/Input_data \
--mount type=bind,src=$(pwd)/output_data,dst=/Output_data \
{IMAGE_ID}
eukphylo:1
```
After development, GitHub CICD workflows can be added to automatically build and release the dockerfile for the end user.