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Updated EukPhylo QuickStart (markdown)

Godwin Ani 2025-03-05 16:28:38 -05:00
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EukPhylo-QuickStart.md

@ -5,20 +5,15 @@
The [docker file](https://github.com/Katzlab/EukPhylo/blob/Docker/PTL2/Dockerfile) can be executed with: The [docker file](https://github.com/Katzlab/EukPhylo/blob/Docker/PTL2/Dockerfile) can be executed with:
```bash ```bash
cd EukPhylo
# Build the container # Build the container
docker build -t Dockerfile . --tag MyEuk:1 docker build -f Dockerfile.txt . --tag eukphylo:1
# Get the container IMAGE_ID
docker image list
# Current command is: # Current command is:
docker run -it \ docker run -it \
--mount type=bind,src=$(pwd)/databases,dst=/Databases \ --mount type=bind,src=$(pwd)/databases,dst=/Databases \
--mount type=bind,src=$(pwd)/input_data,dst=/Input_data \ --mount type=bind,src=$(pwd)/input_data,dst=/Input_data \
--mount type=bind,src=$(pwd)/output_data,dst=/Output_data \ --mount type=bind,src=$(pwd)/output_data,dst=/Output_data \
{IMAGE_ID} eukphylo:1
``` ```
After development, GitHub CICD workflows can be added to automatically build and release the dockerfile for the end user. After development, GitHub CICD workflows can be added to automatically build and release the dockerfile for the end user.