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Updated PhyloToL Part 1: GF assignment (markdown)

Godwin Ani 2024-08-12 12:12:22 -04:00
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PhyloToL-Part-1:-GF-assignment.md

@ -71,4 +71,9 @@ Replacing the PhyloToL Hook DB with a user-defined set of gene families is strai
Role of each script Role of each script
<img src="https://github.com/Katzlab/PhyloToL-6/blob/main/Other/PTL1_Processing_Transcriptomes_scripts.png" width="100%"> <img src="https://github.com/Katzlab/PhyloToL-6/blob/main/Other/PTL1_Processing_Transcriptomes_scripts.png" width="100%">
Main inputs : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the scripts.
Optional inputs : Gcodes.txt and Conspecific.txt
Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary.
### Processing genomes ### Processing genomes