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Updated TroubleShooting & FAQs (markdown)

Godwin Ani 2024-08-14 13:45:26 -04:00
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TroubleShooting-&-FAQs.md

@ -12,11 +12,11 @@ PhyloToL is not a commercial package, and so it is on each researcher to investi
* Most items are found in our [figshare folder](https://figshare.com/account/home#/projects/196552)
## How do I set up my names and fasta files?
* Required elements are:
> * unique 10 digit code for each taxon (e.g. Op_me_Hsap for humans, Ba_pg_Ecol for _E. coli_)
> * some unique identifier
> * for Part 2, each sequence name should end with a 10 digit code for each gene family (e.g. OG6_123456)
> * example: >Op_me_Hsap_HP067328_OG6_124578
Required elements are:
* unique 10 digit code for each taxon (e.g. Op_me_Hsap for humans, Ba_pg_Ecol for _E. coli_)
* some unique identifier
* for Part 2, each sequence name should end with a 10 digit code for each gene family (e.g. OG6_123456)
* example: >Op_me_Hsap_HP067328_OG6_124578
## What should I look for if I get no output from PTL6p2?
* Check your folder structure, input files, and the scripts. Also make sure to delete the output folder from the previous run.