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Updated EukPhylo QuickStart (markdown)
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@ -64,6 +64,7 @@ EukPhylo part 1 runs CDS (genomes) or assembled transcripts (transcriptomes) thr
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* Hook *.dmnd file ([Current version Hook-1.0.dmnd])
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* Hook *.fasta file ([Current version Hook-1.0.fasta])
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* A folder called “Scripts” with scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Transcriptomes/Scripts) on GitHub
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* An empty folder for the output named as indicated in the run command for flag -o
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### Running:
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`
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