98 Commits

Author	SHA1	Message	Date
Godwin N. Ani	60635820fd	Update trees.py	2025-03-25 17:41:18 -04:00
Godwin N. Ani	2fac05be1d	Update guidance.py	2025-03-25 12:35:22 -04:00
Godwin N. Ani	dedc315f24	Update guidance.py	2025-03-25 12:16:55 -04:00
Godwin N. Ani	102bb533bb	Update utils.py	2025-03-25 10:43:05 -04:00
Godwin N. Ani	95d4b0771e	Update guidance.py	2025-03-25 10:42:23 -04:00
Godwin Ani	07131fa94d	Update trees.py	2025-03-13 17:21:03 -04:00
Godwin Ani	fe79fc37e5	Update trimal for docker	2025-03-11 13:46:09 -04:00
Godwin Ani	0632b1a14f	Add files via upload	2025-03-11 13:23:29 -04:00
Godwin Ani	0a04332784	Delete PTL2/Scripts/guidance.py	2025-03-11 13:23:07 -04:00
Godwin Ani	125440bc65	Add files via upload	2025-03-11 10:11:32 -04:00
Godwin Ani	bad741283f	Delete PTL2/Scripts/guidance.py	2025-03-11 10:11:21 -04:00
Godwin Ani	f84fdd3355	Update guidance.py	2025-03-10 16:55:03 -04:00
Godwin Ani	0100ca628f	Add files via upload	2025-03-05 16:22:54 -05:00
Godwin Ani	d5dbc9038d	Delete PTL2/Scripts/guidance.py	2025-03-05 16:22:34 -05:00
Godwin Ani	7b03c52d21	Update guidance.py	2025-03-04 13:37:16 -05:00
Godwin Ani	ed3d53c108	Update guidance.py	2025-03-04 13:26:34 -05:00
Godwin Ani	4d3ca8309c	Add files via upload	2025-03-04 13:16:00 -05:00
Godwin Ani	d935a6922a	Delete PTL2/Scripts/guidance.py	2025-03-04 13:15:33 -05:00
Godwin Ani	25690a6ccb	Update guidance.py	2025-03-04 12:49:36 -05:00
Adri K. Grow	030401e9b0	Update guidance.py	2025-02-14 13:57:57 -05:00
Auden Cote-L'Heureux	fc190415ee	Updating headers in utils.py	2025-01-19 11:09:21 -05:00
Auden Cote-L'Heureux	743d650b74	updating header in trees.py	2025-01-19 11:08:08 -05:00
Auden Cote-L'Heureux	676a11a287	updating header in preguidance.py	2025-01-19 11:07:49 -05:00
Auden Cote-L'Heureux	0df7470b92	updating header in guidance.py	2025-01-19 11:07:25 -05:00
Auden Cote-L'Heureux	3dc60dcd2e	updating header in concatenate.py	2025-01-19 11:06:23 -05:00
Auden Cote-L'Heureux	60b0f9a9b4	Update contamination.py	2025-01-17 10:16:55 -05:00
Auden Cote-L'Heureux	bd72ed3a43	Update and rename phylotol.py to eukphylo.py	2025-01-17 10:16:27 -05:00
Auden Cote-L'Heureux	eb9e81f4c0	adding iqtree-fast	2025-01-12 12:35:53 -05:00
Auden Cote-L'Heureux	4f5bce5963	Update utils.py	2025-01-12 12:35:05 -05:00
Auden Cote-L'Heureux	d595a51b4f	adding 'allow_large_files' flag	2025-01-09 12:20:59 -05:00
Auden Cote-L'Heureux	31a9295485	Adding flag for large files to guidance.py	2025-01-09 12:19:51 -05:00
Auden Cote-L'Heureux	733851b957	Adding trimal cutoff as parameter	2025-01-09 12:11:54 -05:00
Auden Cote-L'Heureux	c0dfdb6248	Adding trimal cutoff as parameter	2025-01-09 12:11:10 -05:00
Auden Cote-L'Heureux	baf5fd037d	Adding TrimAl cutoff as parameter	2025-01-09 12:09:36 -05:00
Katzlab	d7f02a243c	Fixing concat_target_taxa file read error in concatenation	2024-08-26 15:56:42 -04:00
Katzlab	4b8a3fbe64	Delete PTL2/Scripts/utils.py	2024-08-26 15:56:15 -04:00
Katzlab	c4aab9eaef	Delete PTL2/Scripts/concatenate.py	2024-08-26 15:56:09 -04:00
Katzlab	7904ec8b35	Fixing concat taxon list read error	2024-08-22 11:59:58 -04:00
Katzlab	41cc1354b3	Fixing taxon list read error in concatenate.py	2024-08-22 11:59:38 -04:00
Auden Cote-L'Heureux	426d51ea85	Changing default output location in utils.py	2024-05-29 12:44:15 -04:00
Auden Cote-L'Heureux	f4b29ca82d	Fixing _ vs dot yet again in trees.py	2024-05-16 19:27:06 -04:00
Auden Cote-L'Heureux	2ac482572d	Fixing dot vs dash in trees.py	2024-05-02 14:18:32 -04:00
MCLeleu	0eb002a1bd	Update trees.py ... Changed -T AUTO for -T 10 on the iqtree line	2024-04-17 15:08:24 -04:00
Auden Cote-L'Heureux	18f4686223	Fixing underscore/dot issue in trees.py	2024-04-15 16:25:32 -04:00
Godwin Ani	2f67243515	Add files via upload	2024-04-11 14:43:53 -04:00
Godwin Ani	21e54ab7e4	Reverting to previous version	2024-04-01 11:04:37 -04:00
Godwin Ani	13e6d300c5	Adding keep_iter parameter	2024-03-22 15:07:25 -04:00
Godwin Ani	80ad29e6d5	Adding keep_iter parameter	2024-03-22 15:05:54 -04:00
Auden Cote-L'Heureux	75b06a788e	annotating concatenate.py	2024-02-07 12:52:47 -05:00
Auden Cote-L'Heureux	920b3b4ad4	annotating contamination.py	2024-02-07 12:48:38 -05:00