137 Commits

Author	SHA1	Message	Date
Adri K. Grow	6ff435291c	Update wrapper_submit.sh	2025-02-18 16:29:05 -05:00
Adri K. Grow	e3d215c7e9	Update wrapper_submit.sh	2025-02-13 18:22:03 -05:00
Auden Cote-L'Heureux	5284a71ce8	Updating headers and example commands in wrapper_submit.sh	2025-01-22 12:56:11 -05:00
Auden Cote-L'Heureux	4f033e8ab2	Updating header and example runs in wrapper_submit.sh	2025-01-22 12:51:10 -05:00
Auden Cote-L'Heureux	8d48e65b7f	updating header in wrapper.py	2025-01-19 11:05:28 -05:00
Auden Cote-L'Heureux	0ac714a63b	updating header in CheckSetup.py	2025-01-19 11:04:59 -05:00
Auden Cote-L'Heureux	7348c7445f	updating header in CUB.py	2025-01-19 11:04:41 -05:00
Auden Cote-L'Heureux	3ac37547b7	updating header in 7b_SummaryStats.py	2025-01-19 11:04:02 -05:00
Auden Cote-L'Heureux	de566bf546	updating header in 7a_FinalizeName.py	2025-01-19 11:03:31 -05:00
Auden Cote-L'Heureux	db22976d3c	Updating header in 6_FilterPartials.py	2025-01-19 11:02:43 -05:00
Auden Cote-L'Heureux	a9a151eeb3	updating header in 5_GCodeTranslate.py	2025-01-19 11:02:24 -05:00
Auden Cote-L'Heureux	41223ec75c	updating header in 4_InFrameStopCodonEstimator.py	2025-01-19 11:00:24 -05:00
Auden Cote-L'Heureux	97da58aaf0	updating header in 3_AssignOGs.py	2025-01-19 11:00:00 -05:00
Auden Cote-L'Heureux	ee7dce1af7	updating header in 2b_Identify_Proks.py	2025-01-19 10:59:34 -05:00
Auden Cote-L'Heureux	b61eb8be1b	Updating header in 2a_Identify_rRNA.py	2025-01-19 10:59:10 -05:00
Auden Cote-L'Heureux	ea96ad0fe4	Updating header in 1b_CrossPlateContamination.py	2025-01-19 10:58:09 -05:00
Auden Cote-L'Heureux	1d7749b3a6	Updating header in 1a_TranscriptLengthFilter.py	2025-01-19 10:57:44 -05:00
Auden Cote-L'Heureux	375bfef45e	Updating header wrapper.py	2025-01-19 10:55:37 -05:00
Auden Cote-L'Heureux	f5bb221378	Updating header in CheckSetup.py	2025-01-19 10:54:49 -05:00
Katzlab	31d0a8ddb2	Update CUB.py ... headers	2025-01-19 10:54:01 -05:00
Katzlab	3491166695	Update 5b_SummaryStats.py ... updated headers	2025-01-19 10:51:39 -05:00
Katzlab	cd226beb9c	Update 4_CountOGsDiamond.py	2025-01-19 10:49:41 -05:00
Adri K. Grow	dcf4079b86	Update wrapper_submit.sh ... Updated modules for current grid use.	2024-11-11 21:19:16 -05:00
MCLeleu	f18717ac6b	Add files via upload	2024-10-15 11:46:37 -04:00
MCLeleu	da6ac878d3	Add files via upload	2024-10-15 11:46:12 -04:00
MCLeleu	eb81b5ebfa	Delete PTL1/Transcriptomes/TestData/Sr_rh_Amon_assembledTranscripts.fasta	2024-10-15 11:45:51 -04:00
MCLeleu	679f1a10c8	Delete PTL1/Transcriptomes/TestData/Sr_rh_Aa01_assembledTranscripts.fasta	2024-10-15 11:45:32 -04:00
MCLeleu	85be0f31ca	Delete PTL1/Transcriptomes/TestData/Sr_rh_Emac_assembledTranscripts.fasta	2024-10-15 11:45:21 -04:00
MCLeleu	4472f44e36	Add files via upload	2024-10-15 11:43:54 -04:00
Katzlab	9074a7a9bd	Delete PTL1/README.md	2024-08-09 10:06:05 -04:00
Auden Cote-L'Heureux	2b34d542a0	Fixing OG seqid-splitting error in 3_AssignOGs.py	2024-05-02 14:17:45 -04:00
Auden Cote-L'Heureux	4b934763da	Fixing OG seqid-splitting error in 3_AssignOGs.py	2024-05-02 14:11:31 -04:00
Godwin Ani	b4d92dec13	Fixed blast hits	2024-04-26 14:25:37 -04:00
Godwin Ani	a70558b880	Fixed error with blast hits	2024-04-26 14:24:36 -04:00
Godwin Ani	bbe97c5888	Add files via upload	2024-04-26 14:23:55 -04:00
Auden Cote-L'Heureux	b8a68098f3	Fixing assembled transcript overwrite issue in 7b	2024-03-18 10:16:31 -04:00
Auden Cote-L'Heureux	1dcb7f05dd	Delete PTL1/Transcriptomes/Scripts/7b_SummaryStats.py	2024-03-18 10:15:58 -04:00
Auden Cote-L'Heureux	93b328306a	Halfway done with fix to wrapper.py	2024-02-16 14:10:14 -05:00
Auden Cote-L'Heureux	384dd72125	Adding check to 4_InFrameStopCodonEstimator.py	2024-02-16 14:06:06 -05:00
Auden Cote-L'Heureux	835104592f	Updating headers in CheckSetup.py	2024-01-26 11:47:22 -05:00
Auden Cote-L'Heureux	bf669310fd	Updating header and Hook name check CheckSetup.py	2024-01-26 11:46:06 -05:00
Auden Cote-L'Heureux	df54de3589	Updating header in wrapper.py	2024-01-26 11:42:05 -05:00
Auden Cote-L'Heureux	a3a49f39d2	Updating header in CUB.py	2024-01-26 11:41:05 -05:00
Auden Cote-L'Heureux	f3116ff874	Updating header in 5b_SummaryStats.py	2024-01-26 11:40:30 -05:00
Auden Cote-L'Heureux	427f9f7125	Updating header in 4_CountOGsDiamond.py	2024-01-26 11:38:42 -05:00
Auden Cote-L'Heureux	887d136f5b	Updating header in 5a_FinalizeName.py	2024-01-26 11:37:19 -05:00
Auden Cote-L'Heureux	612e427b4a	Updating header in 4_CountOGsDiamond.py	2024-01-26 11:36:32 -05:00
Auden Cote-L'Heureux	fa20addc6e	Updating header in 3_GCodeTranslate.py	2024-01-26 11:35:25 -05:00
Auden Cote-L'Heureux	7e5e739574	Updating header in 2_GCodeEval.py	2024-01-26 11:30:22 -05:00
Auden Cote-L'Heureux	511f0e7766	Updating header in 1_RenameCDS.py	2024-01-26 11:26:00 -05:00