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Author	SHA1	Message	Date
GiuliaRibeiro	9e4d605bff	Update trees.py	2025-04-18 13:01:33 -04:00
Auden Cote-L'Heureux	d01086e017	Update headers	2025-04-18 09:09:24 -04:00
Auden Cote-L'Heureux	e0930c5748	Update header for new guidance version	2025-04-18 09:09:03 -04:00
Auden Cote-L'Heureux	cc7a66b179	Update README.md to make links more clear	2025-04-18 08:57:06 -04:00
Auden Cote-L'Heureux	16a96f137e	Update guidance_path param	2025-04-18 08:48:42 -04:00
Auden Cote-L'Heureux	fa1f50e6f0	Update guidance_path param	2025-04-18 08:45:40 -04:00
Auden Cote-L'Heureux	9239110401	Updating guidance_path param	2025-04-18 08:45:23 -04:00
Auden Cote-L'Heureux	dc813c351a	Update utils.py	2025-04-18 08:44:21 -04:00
Auden Cote-L'Heureux	e452ae0117	Making the --concat_target_taxa argument optional	2025-04-15 16:23:19 -04:00
Godwin N. Ani	2651fe7b89	Update utils.py	2025-04-07 14:56:38 -04:00
Godwin N. Ani	c92f490837	Update contamination.py	2025-04-07 12:36:17 -04:00
Godwin N. Ani	7074a1e71a	Update contamination.py	2025-04-07 12:24:56 -04:00
Godwin N. Ani	95b26b1880	Update contamination.py	2025-04-07 12:20:56 -04:00
Godwin N. Ani	fba84adb17	Update contamination.py	2025-04-07 11:54:36 -04:00
Godwin N. Ani	8c7a1a2eed	Update contamination.py	2025-04-07 11:29:15 -04:00
Godwin N. Ani	e8aa277e44	Update contamination.py	2025-04-07 11:20:34 -04:00
Godwin N. Ani	998ce5bd9c	Update contamination.py	2025-04-07 11:06:32 -04:00
Adri K. Grow	4da74765ee	Add files via upload	2025-04-06 23:36:01 -04:00
Adri K. Grow	6a9ae23e8c	Delete Utilities/for_fastas/Cluster.py	2025-04-06 23:35:47 -04:00
Godwin N. Ani	0cfea8840c	Update contamination.py	2025-04-04 15:28:08 -04:00
Auden Cote-L'Heureux	d161957d86	Taking out 'both' option of contamination loop	2025-03-28 15:40:58 -04:00
Godwin N. Ani	4e52430af7	Update guidance.py	2025-03-25 12:35:43 -04:00
Godwin N. Ani	fdea233780	Update guidance.py	2025-03-25 12:16:02 -04:00
Godwin N. Ani	d7577022c4	Update CladeSizes.py	2025-03-24 15:01:48 -04:00
Godwin N. Ani	cf0948023d	Update guidance.py	2025-03-24 10:17:36 -04:00
Godwin N. Ani	04c41a6f44	Update guidance.py	2025-03-24 10:16:53 -04:00
Godwin N. Ani	c39df0e39d	Update utils.py	2025-03-24 10:11:35 -04:00
Godwin N. Ani	9b6b28ac03	Update Cluster.py	2025-03-21 13:48:23 -04:00
Godwin N. Ani	31cb84fa28	Update Cluster.py	2025-03-21 13:45:49 -04:00
Godwin N. Ani	a2ec0edb37	Update Cluster.py	2025-03-21 13:43:08 -04:00
Godwin N. Ani	3d8cd2e221	Update Cluster.py	2025-03-21 13:42:57 -04:00
Godwin Ani	e18b3dfe0c	Update Cluster.py	2025-03-21 13:22:21 -04:00
Auden Cote-L'Heureux	8487f1d836	Updating headers in 6_FilterPartials.py	2025-03-19 09:20:37 -04:00
Adri K. Grow	d1b9a64e60	Update run_eukphylo.sh	2025-03-13 17:23:19 -04:00
Adri K. Grow	6ff435291c	Update wrapper_submit.sh	2025-02-18 16:29:05 -05:00
Adri K. Grow	030401e9b0	Update guidance.py	2025-02-14 13:57:57 -05:00
Adri K. Grow	e3d215c7e9	Update wrapper_submit.sh	2025-02-13 18:22:03 -05:00
Adri K. Grow	feab503fb6	Update run_eukphylo.sh	2025-02-13 18:16:29 -05:00
Adri K. Grow	d4f27a3032	Update run_eukphylo.sh	2025-02-13 18:01:48 -05:00
Adri K. Grow	1aebef4725	Delete Utilities/For_Assemblies/ProcessAndRenamePlateTranscripts.py	2025-02-13 16:30:03 -05:00
Adri K. Grow	dfd826ee94	Add files via upload	2025-02-13 16:29:13 -05:00
Godwin Ani	45de3036c9	Update ShortenTips.py	2025-02-04 18:59:31 -05:00
Godwin Ani	7e9b90c79b	Shorten tree tip names	2025-02-04 18:58:53 -05:00
Auden Cote-L'Heureux	5284a71ce8	Updating headers and example commands in wrapper_submit.sh	2025-01-22 12:56:11 -05:00
Auden Cote-L'Heureux	4f033e8ab2	Updating header and example runs in wrapper_submit.sh	2025-01-22 12:51:10 -05:00
Auden Cote-L'Heureux	a559f61567	Generalizing and adding examples to run_eukphylo.sh	2025-01-22 12:28:04 -05:00
Auden Cote-L'Heureux	fc190415ee	Updating headers in utils.py	2025-01-19 11:09:21 -05:00
Auden Cote-L'Heureux	743d650b74	updating header in trees.py	2025-01-19 11:08:08 -05:00
Auden Cote-L'Heureux	676a11a287	updating header in preguidance.py	2025-01-19 11:07:49 -05:00
Auden Cote-L'Heureux	0df7470b92	updating header in guidance.py	2025-01-19 11:07:25 -05:00