76 Commits

Author	SHA1	Message	Date
Katzlab	e7facbf6e7	Update PlotComps.r ... Fixed typo by changing geom_line(data = enc_null, aes(GC3, ENc)) to geom_line(data = enc_null, aes(GC3S, ENc))	2025-06-12 04:27:20 -04:00
Katzlab	3fe4ee3ae5	Update CUB.py ... Updates to notes only, including clarifying that we use GC3 and GC3S interchangeably .. though GC3S probably most correct	2025-06-12 04:25:47 -04:00
Adri K. Grow	4da74765ee	Add files via upload	2025-04-06 23:36:01 -04:00
Adri K. Grow	6a9ae23e8c	Delete Utilities/for_fastas/Cluster.py	2025-04-06 23:35:47 -04:00
Godwin N. Ani	9b6b28ac03	Update Cluster.py	2025-03-21 13:48:23 -04:00
Godwin N. Ani	31cb84fa28	Update Cluster.py	2025-03-21 13:45:49 -04:00
Godwin N. Ani	a2ec0edb37	Update Cluster.py	2025-03-21 13:43:08 -04:00
Godwin N. Ani	3d8cd2e221	Update Cluster.py	2025-03-21 13:42:57 -04:00
Godwin Ani	e18b3dfe0c	Update Cluster.py	2025-03-21 13:22:21 -04:00
Auden Cote-L'Heureux	1e543b3989	Adding TPM calculating script (Salmon)	2025-01-09 12:06:10 -05:00
Auden Cote-L'Heureux	d249add545	Add files via upload	2024-10-17 16:45:55 -04:00
Katzlab	6112f3ebc4	Delete Utilities/for_fastas/README.md	2024-08-09 10:05:19 -04:00
Godwin Ani	d240be1877	Update CUB.py	2024-07-19 12:53:21 -04:00
Godwin Ani	35376a279c	Update Cluster.py	2024-06-03 16:08:46 -04:00
Godwin Ani	ac695b7b78	Update and rename SharedOGs_v1.0.py to SharedOGs.py	2024-06-03 15:59:27 -04:00
Godwin Ani	8d2abb0de0	Update and rename SeqLenToCsv_v1.0.py to SeqLenToCsv.py	2024-06-03 15:59:04 -04:00
Godwin Ani	0c345af48e	Rename Plotcomps_SppName_v1.0.R to Plotcomps_SppName.R	2024-06-03 15:57:57 -04:00
Godwin Ani	f80bf055ae	Rename PlotComps_v2.0.r to PlotComps.r	2024-06-03 15:57:38 -04:00
Godwin Ani	670367552d	Update GC_identifier.py	2024-06-03 15:57:12 -04:00
Godwin Ani	0a9f67aed0	Update CladeSizes.py	2024-06-03 15:56:57 -04:00
Godwin Ani	922b144de8	Update CUB.py	2024-06-03 15:56:43 -04:00
Godwin Ani	5982330b34	Update and rename GuidanceWrapper_v2.1.py to GuidanceWrapper.py	2024-06-03 15:56:23 -04:00
Godwin Ani	5421349446	Rename GC_identifier_v1.0.py to GC_identifier.py	2024-06-03 15:55:54 -04:00
Godwin Ani	5d6122a0e3	Rename Cluster_v2.0.py to Cluster.py	2024-06-03 15:55:39 -04:00
Godwin Ani	76ab006a8c	Rename CladeSizes_v2.0.py to CladeSizes.py	2024-06-03 15:55:26 -04:00
Godwin Ani	0f5ca3a87f	Rename CUB_v2.1.py to CUB.py	2024-06-03 15:55:14 -04:00
Godwin Ani	b02f0518ad	Update GuidanceWrapper_v2.1.py	2024-05-04 23:20:11 -04:00
Godwin Ani	f40873b6b0	Update GuidanceWrapper_v2.1.py	2024-03-19 13:26:41 -04:00
Godwin Ani	06ba70c0f7	Update Iteration parameter	2024-03-19 10:31:59 -04:00
Godwin Ani	b91cf0fb63	Iterations parameter added	2024-03-19 10:29:41 -04:00
Godwin Ani	00ee7e44b3	Rename Plotcomps_speciesName_v1.0.R to Plotcomps_SppName_v1.0.R	2024-02-05 14:22:29 -05:00
Godwin Ani	f71f07a313	Rename Plotcomps_speciesName.R to Plotcomps_speciesName_v1.0.R	2024-02-05 14:21:59 -05:00
Godwin Ani	7865b6dfe7	Add files via upload	2024-02-05 14:19:00 -05:00
Godwin Ani	8be57a0231	SharedOGs_v1.0.py	2024-02-05 13:49:10 -05:00
Godwin Ani	b6744e0f78	Update SharedOGs_v1.0.py	2024-02-05 13:48:49 -05:00
Godwin Ani	4ae1382815	Update Cluster_v2.0.py	2024-02-05 13:25:11 -05:00
Godwin Ani	f6c34517ae	Update Cluster_v2.0.py	2024-02-05 13:23:10 -05:00
Godwin Ani	7268d8f593	Cluster_v2.0.py	2024-01-18 09:31:35 -05:00
Godwin Ani	e8afd97a16	Update Cluster_v2.0.py	2024-01-18 09:29:46 -05:00
Godwin Ani	967999ca0d	Update and rename SeqLengthToCsv_v1.0.py to SeqLenToCsv_v1.0.py	2024-01-15 15:08:40 -05:00
Godwin Ani	2f6bd2afc5	Rename PlotComps.r to PlotComps_v2.0.r	2024-01-15 15:08:03 -05:00
Godwin Ani	14f1caddbc	Update and rename sharedOGs.py to SharedOGs_v1.0.py	2024-01-15 15:07:35 -05:00
Godwin Ani	6e0459c9bb	Update SeqLengthToCsv_v1.0.py	2024-01-15 14:59:32 -05:00
Godwin Ani	188839b99e	Update SeqLengthToCsv_v1.0.py	2024-01-15 14:59:17 -05:00
Godwin Ani	74986dc0c0	Rename SeqLengthToCsv_Feb9.py to SeqLengthToCsv_v1.0.py	2024-01-15 14:58:54 -05:00
Godwin Ani	895e2aaafe	Update GC_identifier_v1.0.py	2024-01-15 14:57:45 -05:00
Godwin Ani	d415cca1e8	Rename OG6_A_G.py to GC_identifier_v1.0.py	2024-01-15 14:57:10 -05:00
Godwin Ani	88da115935	Rename ClusterMC_Feb9.py to Cluster_v2.0.py	2024-01-15 14:55:27 -05:00
Godwin Ani	d86742bf39	Update headers	2024-01-12 12:11:02 -05:00
Godwin Ani	05d15104cf	Update headers	2024-01-12 10:59:47 -05:00