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Author	SHA1	Message	Date
Godwin Ani	0100ca628f	Add files via upload	2025-03-05 16:22:54 -05:00
Godwin Ani	d5dbc9038d	Delete PTL2/Scripts/guidance.py	2025-03-05 16:22:34 -05:00
Godwin Ani	3731c95527	Update README.md	2025-03-05 16:12:21 -05:00
Godwin Ani	7b03c52d21	Update guidance.py	2025-03-04 13:37:16 -05:00
Godwin Ani	ed3d53c108	Update guidance.py	2025-03-04 13:26:34 -05:00
Godwin Ani	4d3ca8309c	Add files via upload	2025-03-04 13:16:00 -05:00
Godwin Ani	d935a6922a	Delete PTL2/Scripts/guidance.py	2025-03-04 13:15:33 -05:00
Godwin Ani	25690a6ccb	Update guidance.py	2025-03-04 12:49:36 -05:00
Godwin Ani	30b8834605	Merge pull request #1 from DLBPointon/patch-1 ... Patch 1	2025-02-26 16:36:59 -05:00
Damon-Lee Pointon	ab179b5024	Update run_eukphylo.sh ... a lowly `/` was missing	2025-02-25 10:42:59 +00:00
Damon-Lee Pointon	742eb7008a	Create Dockerfile	2025-02-25 10:42:23 +00:00
Damon-Lee Pointon	154f0ffc56	Update run_eukphylo.sh ... Updating Path var	2025-02-25 10:35:29 +00:00
Damon-Lee Pointon	c9d23509ce	Update README.md	2025-02-25 10:26:12 +00:00
Damon-Lee Pointon	05ecacf9b9	Update run_eukphylo.sh ... Added in the variables to the script to increase configurability.	2025-02-25 10:15:05 +00:00
Godwin Ani	88c166754a	docker wrapper_submit.sh	2025-02-24 11:28:38 -05:00
Godwin Ani	6924789f0f	docker wrapper_submit.sh	2025-02-24 11:27:06 -05:00
Godwin Ani	e9d37afe43	docker run_eukphylo.sh	2025-02-24 11:25:33 -05:00
Adri K. Grow	6ff435291c	Update wrapper_submit.sh	2025-02-18 16:29:05 -05:00
Adri K. Grow	030401e9b0	Update guidance.py	2025-02-14 13:57:57 -05:00
Adri K. Grow	e3d215c7e9	Update wrapper_submit.sh	2025-02-13 18:22:03 -05:00
Adri K. Grow	feab503fb6	Update run_eukphylo.sh	2025-02-13 18:16:29 -05:00
Adri K. Grow	d4f27a3032	Update run_eukphylo.sh	2025-02-13 18:01:48 -05:00
Adri K. Grow	1aebef4725	Delete Utilities/For_Assemblies/ProcessAndRenamePlateTranscripts.py	2025-02-13 16:30:03 -05:00
Adri K. Grow	dfd826ee94	Add files via upload	2025-02-13 16:29:13 -05:00
Godwin Ani	45de3036c9	Update ShortenTips.py	2025-02-04 18:59:31 -05:00
Godwin Ani	7e9b90c79b	Shorten tree tip names	2025-02-04 18:58:53 -05:00
Auden Cote-L'Heureux	5284a71ce8	Updating headers and example commands in wrapper_submit.sh	2025-01-22 12:56:11 -05:00
Auden Cote-L'Heureux	4f033e8ab2	Updating header and example runs in wrapper_submit.sh	2025-01-22 12:51:10 -05:00
Auden Cote-L'Heureux	a559f61567	Generalizing and adding examples to run_eukphylo.sh	2025-01-22 12:28:04 -05:00
Auden Cote-L'Heureux	fc190415ee	Updating headers in utils.py	2025-01-19 11:09:21 -05:00
Auden Cote-L'Heureux	743d650b74	updating header in trees.py	2025-01-19 11:08:08 -05:00
Auden Cote-L'Heureux	676a11a287	updating header in preguidance.py	2025-01-19 11:07:49 -05:00
Auden Cote-L'Heureux	0df7470b92	updating header in guidance.py	2025-01-19 11:07:25 -05:00
Auden Cote-L'Heureux	3dc60dcd2e	updating header in concatenate.py	2025-01-19 11:06:23 -05:00
Auden Cote-L'Heureux	8d48e65b7f	updating header in wrapper.py	2025-01-19 11:05:28 -05:00
Auden Cote-L'Heureux	0ac714a63b	updating header in CheckSetup.py	2025-01-19 11:04:59 -05:00
Auden Cote-L'Heureux	7348c7445f	updating header in CUB.py	2025-01-19 11:04:41 -05:00
Auden Cote-L'Heureux	3ac37547b7	updating header in 7b_SummaryStats.py	2025-01-19 11:04:02 -05:00
Auden Cote-L'Heureux	de566bf546	updating header in 7a_FinalizeName.py	2025-01-19 11:03:31 -05:00
Auden Cote-L'Heureux	db22976d3c	Updating header in 6_FilterPartials.py	2025-01-19 11:02:43 -05:00
Auden Cote-L'Heureux	a9a151eeb3	updating header in 5_GCodeTranslate.py	2025-01-19 11:02:24 -05:00
Auden Cote-L'Heureux	41223ec75c	updating header in 4_InFrameStopCodonEstimator.py	2025-01-19 11:00:24 -05:00
Auden Cote-L'Heureux	97da58aaf0	updating header in 3_AssignOGs.py	2025-01-19 11:00:00 -05:00
Auden Cote-L'Heureux	ee7dce1af7	updating header in 2b_Identify_Proks.py	2025-01-19 10:59:34 -05:00
Auden Cote-L'Heureux	b61eb8be1b	Updating header in 2a_Identify_rRNA.py	2025-01-19 10:59:10 -05:00
Auden Cote-L'Heureux	ea96ad0fe4	Updating header in 1b_CrossPlateContamination.py	2025-01-19 10:58:09 -05:00
Auden Cote-L'Heureux	1d7749b3a6	Updating header in 1a_TranscriptLengthFilter.py	2025-01-19 10:57:44 -05:00
Auden Cote-L'Heureux	375bfef45e	Updating header wrapper.py	2025-01-19 10:55:37 -05:00
Auden Cote-L'Heureux	f5bb221378	Updating header in CheckSetup.py	2025-01-19 10:54:49 -05:00
Katzlab	31d0a8ddb2	Update CUB.py ... headers	2025-01-19 10:54:01 -05:00