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Author	SHA1	Message	Date
Godwin N. Ani	04c41a6f44	Update guidance.py	2025-03-24 10:16:53 -04:00
Godwin N. Ani	c39df0e39d	Update utils.py	2025-03-24 10:11:35 -04:00
Godwin N. Ani	9b6b28ac03	Update Cluster.py	2025-03-21 13:48:23 -04:00
Godwin N. Ani	31cb84fa28	Update Cluster.py	2025-03-21 13:45:49 -04:00
Godwin N. Ani	a2ec0edb37	Update Cluster.py	2025-03-21 13:43:08 -04:00
Godwin N. Ani	3d8cd2e221	Update Cluster.py	2025-03-21 13:42:57 -04:00
Godwin Ani	e18b3dfe0c	Update Cluster.py	2025-03-21 13:22:21 -04:00
Auden Cote-L'Heureux	8487f1d836	Updating headers in 6_FilterPartials.py	2025-03-19 09:20:37 -04:00
Adri K. Grow	d1b9a64e60	Update run_eukphylo.sh	2025-03-13 17:23:19 -04:00
Adri K. Grow	6ff435291c	Update wrapper_submit.sh	2025-02-18 16:29:05 -05:00
Adri K. Grow	030401e9b0	Update guidance.py	2025-02-14 13:57:57 -05:00
Adri K. Grow	e3d215c7e9	Update wrapper_submit.sh	2025-02-13 18:22:03 -05:00
Adri K. Grow	feab503fb6	Update run_eukphylo.sh	2025-02-13 18:16:29 -05:00
Adri K. Grow	d4f27a3032	Update run_eukphylo.sh	2025-02-13 18:01:48 -05:00
Adri K. Grow	1aebef4725	Delete Utilities/For_Assemblies/ProcessAndRenamePlateTranscripts.py	2025-02-13 16:30:03 -05:00
Adri K. Grow	dfd826ee94	Add files via upload	2025-02-13 16:29:13 -05:00
Godwin Ani	45de3036c9	Update ShortenTips.py	2025-02-04 18:59:31 -05:00
Godwin Ani	7e9b90c79b	Shorten tree tip names	2025-02-04 18:58:53 -05:00
Auden Cote-L'Heureux	5284a71ce8	Updating headers and example commands in wrapper_submit.sh	2025-01-22 12:56:11 -05:00
Auden Cote-L'Heureux	4f033e8ab2	Updating header and example runs in wrapper_submit.sh	2025-01-22 12:51:10 -05:00
Auden Cote-L'Heureux	a559f61567	Generalizing and adding examples to run_eukphylo.sh	2025-01-22 12:28:04 -05:00
Auden Cote-L'Heureux	fc190415ee	Updating headers in utils.py	2025-01-19 11:09:21 -05:00
Auden Cote-L'Heureux	743d650b74	updating header in trees.py	2025-01-19 11:08:08 -05:00
Auden Cote-L'Heureux	676a11a287	updating header in preguidance.py	2025-01-19 11:07:49 -05:00
Auden Cote-L'Heureux	0df7470b92	updating header in guidance.py	2025-01-19 11:07:25 -05:00
Auden Cote-L'Heureux	3dc60dcd2e	updating header in concatenate.py	2025-01-19 11:06:23 -05:00
Auden Cote-L'Heureux	8d48e65b7f	updating header in wrapper.py	2025-01-19 11:05:28 -05:00
Auden Cote-L'Heureux	0ac714a63b	updating header in CheckSetup.py	2025-01-19 11:04:59 -05:00
Auden Cote-L'Heureux	7348c7445f	updating header in CUB.py	2025-01-19 11:04:41 -05:00
Auden Cote-L'Heureux	3ac37547b7	updating header in 7b_SummaryStats.py	2025-01-19 11:04:02 -05:00
Auden Cote-L'Heureux	de566bf546	updating header in 7a_FinalizeName.py	2025-01-19 11:03:31 -05:00
Auden Cote-L'Heureux	db22976d3c	Updating header in 6_FilterPartials.py	2025-01-19 11:02:43 -05:00
Auden Cote-L'Heureux	a9a151eeb3	updating header in 5_GCodeTranslate.py	2025-01-19 11:02:24 -05:00
Auden Cote-L'Heureux	41223ec75c	updating header in 4_InFrameStopCodonEstimator.py	2025-01-19 11:00:24 -05:00
Auden Cote-L'Heureux	97da58aaf0	updating header in 3_AssignOGs.py	2025-01-19 11:00:00 -05:00
Auden Cote-L'Heureux	ee7dce1af7	updating header in 2b_Identify_Proks.py	2025-01-19 10:59:34 -05:00
Auden Cote-L'Heureux	b61eb8be1b	Updating header in 2a_Identify_rRNA.py	2025-01-19 10:59:10 -05:00
Auden Cote-L'Heureux	ea96ad0fe4	Updating header in 1b_CrossPlateContamination.py	2025-01-19 10:58:09 -05:00
Auden Cote-L'Heureux	1d7749b3a6	Updating header in 1a_TranscriptLengthFilter.py	2025-01-19 10:57:44 -05:00
Auden Cote-L'Heureux	375bfef45e	Updating header wrapper.py	2025-01-19 10:55:37 -05:00
Auden Cote-L'Heureux	f5bb221378	Updating header in CheckSetup.py	2025-01-19 10:54:49 -05:00
Katzlab	31d0a8ddb2	Update CUB.py ... headers	2025-01-19 10:54:01 -05:00
Katzlab	3491166695	Update 5b_SummaryStats.py ... updated headers	2025-01-19 10:51:39 -05:00
Katzlab	cd226beb9c	Update 4_CountOGsDiamond.py	2025-01-19 10:49:41 -05:00
Auden Cote-L'Heureux	10a8c2f78a	Notes in run_eukphylo.sh, further updates needed	2025-01-19 10:27:34 -05:00
Auden Cote-L'Heureux	2173eda5a0	Update run_eukphylo.sh	2025-01-17 10:34:37 -05:00
Auden Cote-L'Heureux	60b0f9a9b4	Update contamination.py	2025-01-17 10:16:55 -05:00
Auden Cote-L'Heureux	bd72ed3a43	Update and rename phylotol.py to eukphylo.py	2025-01-17 10:16:27 -05:00
Auden Cote-L'Heureux	0fbd2ae863	Rename run_phylotol.sh to run_eukphylo.sh	2025-01-17 10:16:01 -05:00
Auden Cote-L'Heureux	19943a13fd	Delete PTL1_gene_families	2025-01-17 10:03:53 -05:00