139 Commits

Author	SHA1	Message	Date
Godwin Ani	3f8bc48a3f	Update ColorByClade_v2.2.py	2024-04-01 11:11:06 -04:00
Godwin Ani	a59cbe1102	ColorByClade_v2.1.py to ColorByClade_v2.2.py	2024-04-01 11:10:18 -04:00
Godwin Ani	81a46d2714	Cannot set myself as outgroup catch	2024-04-01 11:09:45 -04:00
Godwin Ani	f40873b6b0	Update GuidanceWrapper_v2.1.py	2024-03-19 13:26:41 -04:00
Godwin Ani	06ba70c0f7	Update Iteration parameter	2024-03-19 10:31:59 -04:00
Godwin Ani	b91cf0fb63	Iterations parameter added	2024-03-19 10:29:41 -04:00
Adri K. Grow	e87a10ad9b	Add files via upload	2024-03-15 11:35:33 -04:00
Adri K. Grow	97b9c8ee67	Delete Utilities/for_taxonomy/ReadMapping_v2.0.py	2024-03-15 11:35:18 -04:00
Katzlab	ca23f3f789	Update ColorByClade_v2.1.py ... undoing "fix" that was meant to allow you to color trees twice...	2024-02-20 16:48:44 -05:00
Auden Cote-L'Heureux	7ca7e378bc	Update ColorByClade_v2.1.py	2024-02-16 08:37:20 -05:00
Katzlab	710927f5fc	Update CladeGrabbing_v2.1.py	2024-02-14 17:46:48 -05:00
Godwin Ani	00ee7e44b3	Rename Plotcomps_speciesName_v1.0.R to Plotcomps_SppName_v1.0.R	2024-02-05 14:22:29 -05:00
Godwin Ani	f71f07a313	Rename Plotcomps_speciesName.R to Plotcomps_speciesName_v1.0.R	2024-02-05 14:21:59 -05:00
Godwin Ani	7865b6dfe7	Add files via upload	2024-02-05 14:19:00 -05:00
Godwin Ani	f6cb9e95ff	Update CountTaxonOccurence_v2.0.py	2024-02-05 13:53:22 -05:00
Godwin Ani	ded4143f11	Rename CladeSizes_v3.0.py to CladeSizes_v2.0.py	2024-02-05 13:51:38 -05:00
Godwin Ani	8be57a0231	SharedOGs_v1.0.py	2024-02-05 13:49:10 -05:00
Godwin Ani	b6744e0f78	Update SharedOGs_v1.0.py	2024-02-05 13:48:49 -05:00
Godwin Ani	4ae1382815	Update Cluster_v2.0.py	2024-02-05 13:25:11 -05:00
Godwin Ani	f6c34517ae	Update Cluster_v2.0.py	2024-02-05 13:23:10 -05:00
Katzlab	59b74bfa5f	Update CladeGrabbing_v2.1.py	2024-01-29 08:20:30 -05:00
Godwin Ani	427f39325b	Delete Utilities/Basic statistics directory	2024-01-25 15:17:59 -05:00
Godwin Ani	82de92e12e	Create Readme.md	2024-01-25 15:15:50 -05:00
Katzlab	719ce9bb9d	Added optional line to have keys WITHIN names rather than exclusively at start of name	2024-01-20 16:44:02 -05:00
Godwin Ani	7268d8f593	Cluster_v2.0.py	2024-01-18 09:31:35 -05:00
Godwin Ani	e8afd97a16	Update Cluster_v2.0.py	2024-01-18 09:29:46 -05:00
Godwin Ani	967999ca0d	Update and rename SeqLengthToCsv_v1.0.py to SeqLenToCsv_v1.0.py	2024-01-15 15:08:40 -05:00
Godwin Ani	2f6bd2afc5	Rename PlotComps.r to PlotComps_v2.0.r	2024-01-15 15:08:03 -05:00
Godwin Ani	14f1caddbc	Update and rename sharedOGs.py to SharedOGs_v1.0.py	2024-01-15 15:07:35 -05:00
Godwin Ani	4b4310a0c8	Update and rename get_taxonomy.py to GetTaxonomy_v1.0.py	2024-01-15 15:06:34 -05:00
Godwin Ani	035b8a61f0	Update and rename Query_SRA_egs.py to QuerySRA_v1.0.py	2024-01-15 15:05:23 -05:00
Godwin Ani	fa44e2176c	Update and rename get_unique_taxa.py to GetUniqueTaxa_v1.0.py	2024-01-15 15:03:39 -05:00
Godwin Ani	c1b32c97ae	Update ReadMapping_v2.0.py	2024-01-15 15:02:24 -05:00
Godwin Ani	a63b2e7dd7	Rename readmapping.py to ReadMapping_v2.0.py	2024-01-15 15:01:33 -05:00
Godwin Ani	dfa0f81763	Update and rename rename_tip_labels.py to RenameTips_v1.0.py	2024-01-15 15:00:53 -05:00
Godwin Ani	a25d0ac289	Rename CountTaxonOccurence.py to CountTaxonOccurence_v2.0.py	2024-01-15 15:00:07 -05:00
Godwin Ani	6e0459c9bb	Update SeqLengthToCsv_v1.0.py	2024-01-15 14:59:32 -05:00
Godwin Ani	188839b99e	Update SeqLengthToCsv_v1.0.py	2024-01-15 14:59:17 -05:00
Godwin Ani	74986dc0c0	Rename SeqLengthToCsv_Feb9.py to SeqLengthToCsv_v1.0.py	2024-01-15 14:58:54 -05:00
Godwin Ani	895e2aaafe	Update GC_identifier_v1.0.py	2024-01-15 14:57:45 -05:00
Godwin Ani	d415cca1e8	Rename OG6_A_G.py to GC_identifier_v1.0.py	2024-01-15 14:57:10 -05:00
Godwin Ani	88da115935	Rename ClusterMC_Feb9.py to Cluster_v2.0.py	2024-01-15 14:55:27 -05:00
Godwin Ani	0aced94675	Update Assess_transcriptomes_v2.0.py	2024-01-15 14:54:55 -05:00
Godwin Ani	e756e8733b	Update and rename gappiness.py to Gappiness_v2.0.py	2024-01-15 14:54:18 -05:00
Godwin Ani	12ba81abb7	Rename Assess_transcriptomes.py to Assess_transcriptomes_v2.0.py	2024-01-15 14:53:03 -05:00
Godwin Ani	06a7bd81ef	Rename plot_transcriptomes_v2.0.R to Plot_transcriptomes_v2.0.R	2024-01-15 14:52:47 -05:00
Godwin Ani	297d0920fd	Rename plot_transcriptomes.R to plot_transcriptomes_v2.0.R	2024-01-15 14:52:31 -05:00
Godwin Ani	cac7dbdc93	Rename plot_assemblies.R to plot_transcriptomes.R	2024-01-15 14:52:00 -05:00
Godwin Ani	36153e21c4	Rename assess_transcriptomes.py to Assess_transcriptomes.py	2024-01-15 14:51:21 -05:00
Godwin Ani	d86742bf39	Update headers	2024-01-12 12:11:02 -05:00