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Author	SHA1	Message	Date
Adri K. Grow	b667dd6478	Update CountTaxonOccurence.py ... updated header	2024-08-07 18:16:01 -04:00
Godwin Ani	d240be1877	Update CUB.py	2024-07-19 12:53:21 -04:00
Katzlab	20e38f57b5	Update ColorByClade.py ... added example use and note on how to turn off rooting	2024-07-16 09:23:57 -04:00
Katzlab	6a86fded41	Update CountTaxonOccurence.py ... improving header	2024-06-09 13:02:38 -04:00
Katzlab	7aac410d85	Update CountTaxonOccurence.py ... adding option to look at only focal major clades	2024-06-09 13:01:59 -04:00
Katzlab	552e958952	Update CountTaxonOccurence.py ... updated to include summary of major and minor clades, and to allow target minor clade list	2024-06-09 12:44:26 -04:00
Katzlab	436cad7238	Purple color for EE	2024-06-06 17:23:26 -04:00
Godwin Ani	fd7b2e7302	rooting	2024-06-04 12:47:49 -04:00
Godwin Ani	405217e2a2	Update Gappiness.py	2024-06-03 16:09:29 -04:00
Godwin Ani	35376a279c	Update Cluster.py	2024-06-03 16:08:46 -04:00
Godwin Ani	f0799852b8	Update and rename RenameTips_v1.0.py to RenameTips.py	2024-06-03 16:07:31 -04:00
Godwin Ani	2635deefc1	Update and rename CountTaxonOccurence_v2.0.py to CountTaxonOccurence.py	2024-06-03 16:07:05 -04:00
Godwin Ani	81e5d5655e	Update and rename ContaminationBySisters_v2.2.py to ContaminationBySisters.py	2024-06-03 16:06:42 -04:00
Godwin Ani	a9ea2881be	Update and rename ColorByClade_v2.2.py to ColorByClade.py	2024-06-03 16:06:19 -04:00
Godwin Ani	6a9c37b71f	Update and rename CladeSizes_v2.0.py to CladeSizes.py	2024-06-03 16:06:00 -04:00
Godwin Ani	577e95d5e9	fix copying files twice	2024-06-03 16:05:35 -04:00
Godwin Ani	2a55025595	Delete Utilities/for_trees/ColorByClade_v3.2.py	2024-06-03 16:04:59 -04:00
Godwin Ani	c41de01a2c	Update and rename CladeGrabbing_v3.2.py to CladeGrabbing.py	2024-06-03 16:03:51 -04:00
Godwin Ani	160c4e58cc	Fix copying the files twice	2024-06-03 16:03:13 -04:00
Godwin Ani	19e19c7403	Update and rename ReadMapping_v2.0.py to ReadMapping.py	2024-06-03 16:00:49 -04:00
Godwin Ani	ac36890622	Update and rename QuerySRA_v1.0.py to QuerySRA.py	2024-06-03 16:00:31 -04:00
Godwin Ani	2f53e0ca24	Update and rename GetUniqueTaxa_v1.0.py to GetUniqueTaxa.py	2024-06-03 16:00:15 -04:00
Godwin Ani	bba13c35c6	Update and rename GetTaxonomy_v1.0.py to GetTaxonomy.py	2024-06-03 15:59:55 -04:00
Godwin Ani	ac695b7b78	Update and rename SharedOGs_v1.0.py to SharedOGs.py	2024-06-03 15:59:27 -04:00
Godwin Ani	8d2abb0de0	Update and rename SeqLenToCsv_v1.0.py to SeqLenToCsv.py	2024-06-03 15:59:04 -04:00
Godwin Ani	0c345af48e	Rename Plotcomps_SppName_v1.0.R to Plotcomps_SppName.R	2024-06-03 15:57:57 -04:00
Godwin Ani	f80bf055ae	Rename PlotComps_v2.0.r to PlotComps.r	2024-06-03 15:57:38 -04:00
Godwin Ani	670367552d	Update GC_identifier.py	2024-06-03 15:57:12 -04:00
Godwin Ani	0a9f67aed0	Update CladeSizes.py	2024-06-03 15:56:57 -04:00
Godwin Ani	922b144de8	Update CUB.py	2024-06-03 15:56:43 -04:00
Godwin Ani	5982330b34	Update and rename GuidanceWrapper_v2.1.py to GuidanceWrapper.py	2024-06-03 15:56:23 -04:00
Godwin Ani	5421349446	Rename GC_identifier_v1.0.py to GC_identifier.py	2024-06-03 15:55:54 -04:00
Godwin Ani	5d6122a0e3	Rename Cluster_v2.0.py to Cluster.py	2024-06-03 15:55:39 -04:00
Godwin Ani	76ab006a8c	Rename CladeSizes_v2.0.py to CladeSizes.py	2024-06-03 15:55:26 -04:00
Godwin Ani	0f5ca3a87f	Rename CUB_v2.1.py to CUB.py	2024-06-03 15:55:14 -04:00
Godwin Ani	b22feff388	Rename Gappiness_v2.0.py to Gappiness.py	2024-06-03 15:54:55 -04:00
Godwin Ani	182cf8ae9e	Rename Plot_transcriptomes_v2.0.R to Plot_transcriptomes.R	2024-06-03 15:54:40 -04:00
Godwin Ani	189d980fb3	Rename Assess_transcriptomes_v2.0.py to Assess_transcriptomes.py	2024-06-03 15:54:24 -04:00
Adri K. Grow	4f46d630dc	Update CladeGrabbing_v3.2.py	2024-06-03 14:50:00 -04:00
Auden Cote-L'Heureux	426d51ea85	Changing default output location in utils.py	2024-05-29 12:44:15 -04:00
Auden Cote-L'Heureux	f4b29ca82d	Fixing _ vs dot yet again in trees.py	2024-05-16 19:27:06 -04:00
Adri K. Grow	d6b89c23d1	Update run_phylotol.sh	2024-05-15 10:27:00 -04:00
Godwin Ani	b02f0518ad	Update GuidanceWrapper_v2.1.py	2024-05-04 23:20:11 -04:00
Auden Cote-L'Heureux	2ac482572d	Fixing dot vs dash in trees.py	2024-05-02 14:18:32 -04:00
Auden Cote-L'Heureux	2b34d542a0	Fixing OG seqid-splitting error in 3_AssignOGs.py	2024-05-02 14:17:45 -04:00
Auden Cote-L'Heureux	4b934763da	Fixing OG seqid-splitting error in 3_AssignOGs.py	2024-05-02 14:11:31 -04:00
Godwin Ani	b4d92dec13	Fixed blast hits	2024-04-26 14:25:37 -04:00
Godwin Ani	a70558b880	Fixed error with blast hits	2024-04-26 14:24:36 -04:00
Godwin Ani	bbe97c5888	Add files via upload	2024-04-26 14:23:55 -04:00
MCLeleu	0eb002a1bd	Update trees.py ... Changed -T AUTO for -T 10 on the iqtree line	2024-04-17 15:08:24 -04:00