198 Commits

Author	SHA1	Message	Date
Godwin Ani	88da115935	Rename ClusterMC_Feb9.py to Cluster_v2.0.py	2024-01-15 14:55:27 -05:00
Godwin Ani	0aced94675	Update Assess_transcriptomes_v2.0.py	2024-01-15 14:54:55 -05:00
Godwin Ani	e756e8733b	Update and rename gappiness.py to Gappiness_v2.0.py	2024-01-15 14:54:18 -05:00
Godwin Ani	12ba81abb7	Rename Assess_transcriptomes.py to Assess_transcriptomes_v2.0.py	2024-01-15 14:53:03 -05:00
Godwin Ani	06a7bd81ef	Rename plot_transcriptomes_v2.0.R to Plot_transcriptomes_v2.0.R	2024-01-15 14:52:47 -05:00
Godwin Ani	297d0920fd	Rename plot_transcriptomes.R to plot_transcriptomes_v2.0.R	2024-01-15 14:52:31 -05:00
Godwin Ani	cac7dbdc93	Rename plot_assemblies.R to plot_transcriptomes.R	2024-01-15 14:52:00 -05:00
Godwin Ani	36153e21c4	Rename assess_transcriptomes.py to Assess_transcriptomes.py	2024-01-15 14:51:21 -05:00
Godwin Ani	d86742bf39	Update headers	2024-01-12 12:11:02 -05:00
Godwin Ani	06d63c6334	Update headers	2024-01-12 11:26:34 -05:00
Godwin Ani	d90385ae27	Update headers	2024-01-12 11:26:02 -05:00
Godwin Ani	d55b87f1d9	Update headers	2024-01-12 11:19:16 -05:00
Godwin Ani	316f7620ed	Update headers	2024-01-12 11:13:28 -05:00
Godwin Ani	b37abda8d5	Update headers	2024-01-12 11:07:31 -05:00
Godwin Ani	05d15104cf	Update headers	2024-01-12 10:59:47 -05:00
Godwin Ani	085d9849e3	Update headers	2024-01-12 10:10:45 -05:00
Godwin Ani	8f47f87460	Update headers	2024-01-12 10:07:42 -05:00
Godwin Ani	ba316d02ed	Update headers	2024-01-12 10:06:18 -05:00
Godwin Ani	6d1dd274ae	Update headers	2024-01-12 10:01:31 -05:00
Godwin Ani	a7acdd26be	Update headers	2024-01-12 09:54:54 -05:00
Auden Cote-L'Heureux	39a3ecb5d8	Changing default tip label font size	2023-12-22 12:00:21 -05:00
Auden Cote-L'Heureux	a53c89fdd7	Updating headers in CladeSizes_v3.0.py	2023-12-19 13:50:17 -05:00
Auden Cote-L'Heureux	d4aed039fd	Adding updated CladeSizes script with summary function	2023-12-19 13:49:49 -05:00
Auden Cote-L'Heureux	2688df4a98	Delete Utilities/for_trees/CladeSizes_v2.0.py	2023-12-19 13:49:13 -05:00
Auden Cote-L'Heureux	c655354a42	Update and rename faralog.py to gappiness.py	2023-12-19 13:28:40 -05:00
Auden Cote-L'Heureux	25b41672b3	Updating default colors in ColorByClade_v2.1.py	2023-12-18 11:21:49 -05:00
Auden Cote-L'Heureux	110e3b7479	Fixing minor error in clade sizes script	2023-12-06 20:11:53 -05:00
Auden Cote-L'Heureux	9cf716d431	Added clade-size (()()()) script	2023-12-01 12:15:21 -05:00
Godwin Ani	31fa46a149	Rename seqs by gc3 width	2023-11-27 15:42:16 -05:00
Auden Cote-L'Heureux	4e1ceae627	Delete Utilities/for_trees/ColorByClade_v2.0.py	2023-11-27 13:54:09 -05:00
Auden Cote-L'Heureux	3dd53c1eb9	Fixing rooting & ladderizing & node labels	2023-11-27 13:53:02 -05:00
MCLeleu	e082b6bf3a	Rename rename_tip_labels .py to rename_tip_labels.py ... Removed a space in the filename	2023-11-15 16:41:31 +01:00
Godwin Ani	f292cf3cf9	Add files via upload	2023-11-13 16:25:52 -05:00
Godwin Ani	c300980148	f/paralogs assessment script	2023-11-07 11:44:36 -05:00
Godwin Ani	b8436d03dd	For adding metadata to tree tip labels	2023-11-06 10:15:53 -05:00
Auden Cote-L'Heureux	4c4997ecff	Update CountTaxonOccurence.py	2023-10-24 11:20:52 -04:00
Auden Cote-L'Heureux	b3fcdc7c3c	Update CountTaxonOccurence.py	2023-10-24 11:20:11 -04:00
Auden Cote-L'Heureux	81f54d2e1c	Update and rename CountTreeTips.py to CountTaxonOccurence.py	2023-10-24 11:19:50 -04:00
Auden Cote-L'Heureux	9edbf3b87c	Small fix CountTreeTips.py	2023-10-24 11:16:11 -04:00
Auden Cote-L'Heureux	8ae3f7ca57	Rename count_tips.py to CountTreeTips.py	2023-10-24 11:15:49 -04:00
Auden Cote-L'Heureux	9d07bca28c	Updating arg parsing in tip counting script	2023-10-24 11:15:37 -04:00
Adri K. Grow	6a0b0ace3a	Add files via upload	2023-09-26 12:49:36 -04:00
Adri K. Grow	e502d2638f	Add files via upload	2023-09-01 14:35:08 -04:00
Godwin Ani	a60fb89a45	output folder error solved	2023-08-24 14:46:32 -04:00
Auden Cote-L'Heureux	13af646e65	Small fix to ColorByClade_v2.0.py	2023-08-22 10:00:11 -04:00
Auden Cote-L'Heureux	42ff780332	Fixing GC3-Degen calculation in CUB script	2023-08-15 15:35:10 -04:00
Auden Cote-L'Heureux	3ec4cbfd63	Delete CUB version with error (2.0)	2023-08-15 15:34:46 -04:00
Auden Cote-L'Heureux	366e91256b	Fixing line splitting bug in GuidanceWrapper_v2.1.py	2023-08-14 15:01:54 -04:00
Auden Cote-L'Heureux	943bc3461d	Adding allowance to backtranslating script for nucleotide sequences shorter than amino acid sequences by 3' trimming	2023-08-10 10:40:19 -04:00
Auden Cote-L'Heureux	29daa4932b	Small update to backtranslating script to account for sequence mismatch	2023-08-10 10:33:34 -04:00