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Author	SHA1	Message	Date
Katzlab	ef6b633de7	Update guidance.py ... tidying comments	2025-06-18 08:43:19 -04:00
Katzlab	c891188eec	Update guidance.py ... updated comments only to clarify versions	2025-06-18 08:37:19 -04:00
Adri K. Grow	c767bd9a0a	Update Trim_Reads.py	2025-06-16 11:25:08 -04:00
Adri K. Grow	c84f3387ff	Update Trim_Reads.py	2025-06-13 12:41:35 -04:00
Adri K. Grow	3e4f4987a2	Update Trim_Reads.py	2025-06-13 12:41:17 -04:00
Katzlab	e7facbf6e7	Update PlotComps.r ... Fixed typo by changing geom_line(data = enc_null, aes(GC3, ENc)) to geom_line(data = enc_null, aes(GC3S, ENc))	2025-06-12 04:27:20 -04:00
Katzlab	3fe4ee3ae5	Update CUB.py ... Updates to notes only, including clarifying that we use GC3 and GC3S interchangeably .. though GC3S probably most correct	2025-06-12 04:25:47 -04:00
Adri K. Grow	d81926f179	Update wrapper_submit.sh	2025-06-12 00:44:27 -04:00
Adri K. Grow	6cb8a7b98a	Update wrapper_submit.sh	2025-06-11 23:46:58 -04:00
GiuliaRibeiro	fdf525d433	Add files via upload	2025-06-11 10:17:50 -04:00
Katzlab	8ccde9800a	Update wrapper_submit.sh ... fixed typo to add backslash at end here	2025-06-02 16:36:02 -04:00
Adri K. Grow	d32fbcc4e8	Update guidance.py ... Updated guidance command for local HPC users	2025-06-02 11:23:34 -04:00
GiuliaRibeiro	9e4d605bff	Update trees.py	2025-04-18 13:01:33 -04:00
Auden Cote-L'Heureux	d01086e017	Update headers	2025-04-18 09:09:24 -04:00
Auden Cote-L'Heureux	e0930c5748	Update header for new guidance version	2025-04-18 09:09:03 -04:00
Auden Cote-L'Heureux	cc7a66b179	Update README.md to make links more clear	2025-04-18 08:57:06 -04:00
Auden Cote-L'Heureux	16a96f137e	Update guidance_path param	2025-04-18 08:48:42 -04:00
Auden Cote-L'Heureux	fa1f50e6f0	Update guidance_path param	2025-04-18 08:45:40 -04:00
Auden Cote-L'Heureux	9239110401	Updating guidance_path param	2025-04-18 08:45:23 -04:00
Auden Cote-L'Heureux	dc813c351a	Update utils.py	2025-04-18 08:44:21 -04:00
Auden Cote-L'Heureux	e452ae0117	Making the --concat_target_taxa argument optional	2025-04-15 16:23:19 -04:00
Godwin N. Ani	2651fe7b89	Update utils.py	2025-04-07 14:56:38 -04:00
Godwin N. Ani	c92f490837	Update contamination.py	2025-04-07 12:36:17 -04:00
Godwin N. Ani	7074a1e71a	Update contamination.py	2025-04-07 12:24:56 -04:00
Godwin N. Ani	95b26b1880	Update contamination.py	2025-04-07 12:20:56 -04:00
Godwin N. Ani	fba84adb17	Update contamination.py	2025-04-07 11:54:36 -04:00
Godwin N. Ani	8c7a1a2eed	Update contamination.py	2025-04-07 11:29:15 -04:00
Godwin N. Ani	e8aa277e44	Update contamination.py	2025-04-07 11:20:34 -04:00
Godwin N. Ani	998ce5bd9c	Update contamination.py	2025-04-07 11:06:32 -04:00
Adri K. Grow	4da74765ee	Add files via upload	2025-04-06 23:36:01 -04:00
Adri K. Grow	6a9ae23e8c	Delete Utilities/for_fastas/Cluster.py	2025-04-06 23:35:47 -04:00
Godwin N. Ani	0cfea8840c	Update contamination.py	2025-04-04 15:28:08 -04:00
Auden Cote-L'Heureux	d161957d86	Taking out 'both' option of contamination loop	2025-03-28 15:40:58 -04:00
Godwin N. Ani	4e52430af7	Update guidance.py	2025-03-25 12:35:43 -04:00
Godwin N. Ani	fdea233780	Update guidance.py	2025-03-25 12:16:02 -04:00
Godwin N. Ani	d7577022c4	Update CladeSizes.py	2025-03-24 15:01:48 -04:00
Godwin N. Ani	cf0948023d	Update guidance.py	2025-03-24 10:17:36 -04:00
Godwin N. Ani	04c41a6f44	Update guidance.py	2025-03-24 10:16:53 -04:00
Godwin N. Ani	c39df0e39d	Update utils.py	2025-03-24 10:11:35 -04:00
Godwin N. Ani	9b6b28ac03	Update Cluster.py	2025-03-21 13:48:23 -04:00
Godwin N. Ani	31cb84fa28	Update Cluster.py	2025-03-21 13:45:49 -04:00
Godwin N. Ani	a2ec0edb37	Update Cluster.py	2025-03-21 13:43:08 -04:00
Godwin N. Ani	3d8cd2e221	Update Cluster.py	2025-03-21 13:42:57 -04:00
Godwin Ani	e18b3dfe0c	Update Cluster.py	2025-03-21 13:22:21 -04:00
Auden Cote-L'Heureux	8487f1d836	Updating headers in 6_FilterPartials.py	2025-03-19 09:20:37 -04:00
Adri K. Grow	d1b9a64e60	Update run_eukphylo.sh	2025-03-13 17:23:19 -04:00
Adri K. Grow	6ff435291c	Update wrapper_submit.sh	2025-02-18 16:29:05 -05:00
Adri K. Grow	030401e9b0	Update guidance.py	2025-02-14 13:57:57 -05:00
Adri K. Grow	e3d215c7e9	Update wrapper_submit.sh	2025-02-13 18:22:03 -05:00
Adri K. Grow	feab503fb6	Update run_eukphylo.sh	2025-02-13 18:16:29 -05:00