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Author	SHA1	Message	Date
Godwin Ani	fa44e2176c	Update and rename get_unique_taxa.py to GetUniqueTaxa_v1.0.py	2024-01-15 15:03:39 -05:00
Godwin Ani	c1b32c97ae	Update ReadMapping_v2.0.py	2024-01-15 15:02:24 -05:00
Godwin Ani	a63b2e7dd7	Rename readmapping.py to ReadMapping_v2.0.py	2024-01-15 15:01:33 -05:00
Godwin Ani	dfa0f81763	Update and rename rename_tip_labels.py to RenameTips_v1.0.py	2024-01-15 15:00:53 -05:00
Godwin Ani	a25d0ac289	Rename CountTaxonOccurence.py to CountTaxonOccurence_v2.0.py	2024-01-15 15:00:07 -05:00
Godwin Ani	6e0459c9bb	Update SeqLengthToCsv_v1.0.py	2024-01-15 14:59:32 -05:00
Godwin Ani	188839b99e	Update SeqLengthToCsv_v1.0.py	2024-01-15 14:59:17 -05:00
Godwin Ani	74986dc0c0	Rename SeqLengthToCsv_Feb9.py to SeqLengthToCsv_v1.0.py	2024-01-15 14:58:54 -05:00
Godwin Ani	895e2aaafe	Update GC_identifier_v1.0.py	2024-01-15 14:57:45 -05:00
Godwin Ani	d415cca1e8	Rename OG6_A_G.py to GC_identifier_v1.0.py	2024-01-15 14:57:10 -05:00
Godwin Ani	88da115935	Rename ClusterMC_Feb9.py to Cluster_v2.0.py	2024-01-15 14:55:27 -05:00
Godwin Ani	0aced94675	Update Assess_transcriptomes_v2.0.py	2024-01-15 14:54:55 -05:00
Godwin Ani	e756e8733b	Update and rename gappiness.py to Gappiness_v2.0.py	2024-01-15 14:54:18 -05:00
Godwin Ani	12ba81abb7	Rename Assess_transcriptomes.py to Assess_transcriptomes_v2.0.py	2024-01-15 14:53:03 -05:00
Godwin Ani	06a7bd81ef	Rename plot_transcriptomes_v2.0.R to Plot_transcriptomes_v2.0.R	2024-01-15 14:52:47 -05:00
Godwin Ani	297d0920fd	Rename plot_transcriptomes.R to plot_transcriptomes_v2.0.R	2024-01-15 14:52:31 -05:00
Godwin Ani	cac7dbdc93	Rename plot_assemblies.R to plot_transcriptomes.R	2024-01-15 14:52:00 -05:00
Godwin Ani	36153e21c4	Rename assess_transcriptomes.py to Assess_transcriptomes.py	2024-01-15 14:51:21 -05:00
Auden Cote-L'Heureux	ccb70d9b46	More flexible OG identifier handling in preguidance.py	2024-01-12 13:25:53 -05:00
Auden Cote-L'Heureux	9f2d34e056	Add OG identifier default utils.py	2024-01-12 13:25:17 -05:00
Godwin Ani	d86742bf39	Update headers	2024-01-12 12:11:02 -05:00
Godwin Ani	06d63c6334	Update headers	2024-01-12 11:26:34 -05:00
Godwin Ani	d90385ae27	Update headers	2024-01-12 11:26:02 -05:00
Godwin Ani	d55b87f1d9	Update headers	2024-01-12 11:19:16 -05:00
Godwin Ani	316f7620ed	Update headers	2024-01-12 11:13:28 -05:00
Godwin Ani	b37abda8d5	Update headers	2024-01-12 11:07:31 -05:00
Godwin Ani	05d15104cf	Update headers	2024-01-12 10:59:47 -05:00
Godwin Ani	085d9849e3	Update headers	2024-01-12 10:10:45 -05:00
Godwin Ani	8f47f87460	Update headers	2024-01-12 10:07:42 -05:00
Godwin Ani	ba316d02ed	Update headers	2024-01-12 10:06:18 -05:00
Godwin Ani	6d1dd274ae	Update headers	2024-01-12 10:01:31 -05:00
Godwin Ani	a7acdd26be	Update headers	2024-01-12 09:54:54 -05:00
Auden Cote-L'Heureux	39a3ecb5d8	Changing default tip label font size	2023-12-22 12:00:21 -05:00
Auden Cote-L'Heureux	a53c89fdd7	Updating headers in CladeSizes_v3.0.py	2023-12-19 13:50:17 -05:00
Auden Cote-L'Heureux	d4aed039fd	Adding updated CladeSizes script with summary function	2023-12-19 13:49:49 -05:00
Auden Cote-L'Heureux	2688df4a98	Delete Utilities/for_trees/CladeSizes_v2.0.py	2023-12-19 13:49:13 -05:00
Auden Cote-L'Heureux	c655354a42	Update and rename faralog.py to gappiness.py	2023-12-19 13:28:40 -05:00
Auden Cote-L'Heureux	25b41672b3	Updating default colors in ColorByClade_v2.1.py	2023-12-18 11:21:49 -05:00
Auden Cote-L'Heureux	110e3b7479	Fixing minor error in clade sizes script	2023-12-06 20:11:53 -05:00
Auden Cote-L'Heureux	0cd6d05960	Temporarily removing contamination loop	2023-12-04 16:04:46 -05:00
Godwin Ani	333585acde	added sim taxa and Og identifier flag	2023-12-04 15:52:10 -05:00
Godwin Ani	304cebc73f	Utils script with sim taxa and OG identifier flag	2023-12-04 15:00:10 -05:00
Godwin Ani	b466a30a96	Updated preguidance with no logger dependency	2023-12-04 14:54:57 -05:00
Auden Cote-L'Heureux	a15ba2402d	Setting -T AUTO in IQ-Tree	2023-12-04 14:31:45 -05:00
Auden Cote-L'Heureux	8dfd0710ef	TEMPORARILY putting the logger here	2023-12-04 14:04:05 -05:00
Auden Cote-L'Heureux	9cf716d431	Added clade-size (()()()) script	2023-12-01 12:15:21 -05:00
Auden Cote-L'Heureux	e9a28b4eaa	Delete PTL2/Scripts/logger.py	2023-11-27 15:46:55 -05:00
Godwin Ani	31fa46a149	Rename seqs by gc3 width	2023-11-27 15:42:16 -05:00
Godwin Ani	f38496cbb1	Update preguidance - OG6 and sim filter	2023-11-27 15:16:21 -05:00
Godwin Ani	9f29a86863	OG6/A/G, Sim Filter by taxa, Removed_seqs_file	2023-11-27 15:15:58 -05:00