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Author	SHA1	Message	Date
Auden Cote-L'Heureux	baf5fd037d	Adding TrimAl cutoff as parameter	2025-01-09 12:09:36 -05:00
Auden Cote-L'Heureux	1e543b3989	Adding TPM calculating script (Salmon)	2025-01-09 12:06:10 -05:00
Auden Cote-L'Heureux	a8a2a5ff2d	Moving CountTaxonOccurence.py	2025-01-08 10:38:23 -05:00
Adri K. Grow	1c309f8e10	Update ReadMapping.py	2024-12-06 12:20:50 -05:00
Adri K. Grow	61f808343f	Update run_phylotol.sh	2024-11-26 13:04:53 -05:00
Godwin Ani	22eb559650	Update run_phylotol.sh	2024-11-12 09:01:44 -05:00
Adri K. Grow	dcf4079b86	Update wrapper_submit.sh ... Updated modules for current grid use.	2024-11-11 21:19:16 -05:00
Godwin Ani	f2701e7f65	Update run_phylotol.sh	2024-11-11 17:01:32 -05:00
Adri K. Grow	a0b45ed2c8	Update CladeSizes.py ... Modified to work with clade grabbed input file names.	2024-11-11 08:59:47 -05:00
Auden Cote-L'Heureux	fb6e7aa6e7	Changing CladeGrabbing.py to use less than or equal to for number of contaminants	2024-11-01 10:34:57 -04:00
Auden Cote-L'Heureux	d249add545	Add files via upload	2024-10-17 16:45:55 -04:00
MCLeleu	d57fdad826	Delete Am_tu_He24_assembledTranscripts.fasta	2024-10-15 11:46:54 -04:00
MCLeleu	f18717ac6b	Add files via upload	2024-10-15 11:46:37 -04:00
MCLeleu	da6ac878d3	Add files via upload	2024-10-15 11:46:12 -04:00
MCLeleu	eb81b5ebfa	Delete PTL1/Transcriptomes/TestData/Sr_rh_Amon_assembledTranscripts.fasta	2024-10-15 11:45:51 -04:00
MCLeleu	679f1a10c8	Delete PTL1/Transcriptomes/TestData/Sr_rh_Aa01_assembledTranscripts.fasta	2024-10-15 11:45:32 -04:00
MCLeleu	85be0f31ca	Delete PTL1/Transcriptomes/TestData/Sr_rh_Emac_assembledTranscripts.fasta	2024-10-15 11:45:21 -04:00
MCLeleu	4472f44e36	Add files via upload	2024-10-15 11:43:54 -04:00
MCLeleu	e862010cfc	Add files via upload	2024-10-15 11:43:13 -04:00
Katzlab	d7f02a243c	Fixing concat_target_taxa file read error in concatenation	2024-08-26 15:56:42 -04:00
Katzlab	4b8a3fbe64	Delete PTL2/Scripts/utils.py	2024-08-26 15:56:15 -04:00
Katzlab	c4aab9eaef	Delete PTL2/Scripts/concatenate.py	2024-08-26 15:56:09 -04:00
Katzlab	7904ec8b35	Fixing concat taxon list read error	2024-08-22 11:59:58 -04:00
Katzlab	41cc1354b3	Fixing taxon list read error in concatenate.py	2024-08-22 11:59:38 -04:00
Katzlab	4676ef2b53	Delete Utilities/README.md v6.0	2024-08-14 11:59:56 -04:00
Katzlab	2a305403a5	Update README.md	2024-08-14 11:58:41 -04:00
Katzlab	9ecc2d899a	Delete HookDB directory	2024-08-14 11:52:58 -04:00
MCLeleu	4dc9a3fe74	Delete PTL2/Examplar_runs/Running_PTLp2/Output directory	2024-08-14 10:58:17 -04:00
MCLeleu	246900721c	Delete PTL2/Examplar_runs/Running_PTLp2/Input directory	2024-08-14 10:58:01 -04:00
MCLeleu	8ac84ad0f3	Create README.txt	2024-08-14 10:50:03 -04:00
MCLeleu	1cc10f71a6	Create README.txt	2024-08-14 10:49:17 -04:00
MCLeleu	aad1696e8d	Create test	2024-08-14 10:38:58 -04:00
MCLeleu	c090c7d0c1	Create test	2024-08-14 10:38:42 -04:00
MCLeleu	5703e9d78b	Add files via upload	2024-08-14 16:37:43 +02:00
MCLeleu	68ccdaaa25	Add files via upload	2024-08-14 16:36:38 +02:00
MCLeleu	dd51f21885	Create run_phylotol_command_line.txt	2024-08-14 10:36:09 -04:00
MCLeleu	c73c93e3b5	Create run_phylotol_command_line.txt	2024-08-14 10:35:19 -04:00
MCLeleu	c7afaf41ed	Add files via upload	2024-08-14 16:34:08 +02:00
MCLeleu	2b9a887c04	Create run_phylotol_command_line.txt ... Example command line to run PhyloToL	2024-08-14 10:33:21 -04:00
Katzlab	3f8777c293	Add files via upload	2024-08-13 18:17:38 -04:00
Katzlab	d887fc1414	Add files via upload	2024-08-13 17:38:13 -04:00
Katzlab	4b10734270	Add files via upload	2024-08-13 14:16:05 -04:00
Katzlab	1852531ba0	Delete Other/databases_folderstructure.png	2024-08-13 14:15:57 -04:00
Katzlab	c4df33bfce	Add files via upload	2024-08-13 14:04:33 -04:00
Godwin Ani	e946811002	Add files via upload	2024-08-12 14:33:35 -04:00
Godwin Ani	d5ae095abd	Add files via upload	2024-08-12 14:33:16 -04:00
Godwin Ani	9367bce083	Add files via upload	2024-08-12 13:23:06 -04:00
Godwin Ani	a9079b465a	Add files via upload	2024-08-12 10:50:49 -04:00
Katzlab	3d38c030b2	Update README.md	2024-08-09 15:31:18 -04:00
Katzlab	ca652b7f90	Add files via upload	2024-08-09 15:31:03 -04:00