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  • 61f808343f
         Update run_phylotol.sh Adri K. Grow 2024-11-26 13:04:53 -05:00
  • 22eb559650
         Update run_phylotol.sh Godwin Ani 2024-11-12 09:01:44 -05:00
  • dcf4079b86
         Update wrapper_submit.sh Adri K. Grow 2024-11-11 21:19:16 -05:00
  • f2701e7f65
         Update run_phylotol.sh Godwin Ani 2024-11-11 17:01:32 -05:00
  • a0b45ed2c8
         Update CladeSizes.py Adri K. Grow 2024-11-11 08:59:47 -05:00
  • fb6e7aa6e7
         Changing CladeGrabbing.py to use less than or equal to for number of contaminants Auden Cote-L'Heureux 2024-11-01 10:34:57 -04:00
  • d249add545
         Add files via upload Auden Cote-L'Heureux 2024-10-17 16:45:55 -04:00
  • d57fdad826
         Delete Am_tu_He24_assembledTranscripts.fasta MCLeleu 2024-10-15 11:46:54 -04:00
  • f18717ac6b
         Add files via upload MCLeleu 2024-10-15 11:46:37 -04:00
  • da6ac878d3
         Add files via upload MCLeleu 2024-10-15 11:46:12 -04:00
  • eb81b5ebfa
         Delete PTL1/Transcriptomes/TestData/Sr_rh_Amon_assembledTranscripts.fasta MCLeleu 2024-10-15 11:45:51 -04:00
  • 679f1a10c8
         Delete PTL1/Transcriptomes/TestData/Sr_rh_Aa01_assembledTranscripts.fasta MCLeleu 2024-10-15 11:45:32 -04:00
  • 85be0f31ca
         Delete PTL1/Transcriptomes/TestData/Sr_rh_Emac_assembledTranscripts.fasta MCLeleu 2024-10-15 11:45:21 -04:00
  • 4472f44e36
         Add files via upload MCLeleu 2024-10-15 11:43:54 -04:00
  • e862010cfc
         Add files via upload MCLeleu 2024-10-15 11:43:13 -04:00
  • d7f02a243c
         Fixing concat_target_taxa file read error in concatenation Katzlab 2024-08-26 15:56:42 -04:00
  • 4b8a3fbe64
         Delete PTL2/Scripts/utils.py Katzlab 2024-08-26 15:56:15 -04:00
  • c4aab9eaef
         Delete PTL2/Scripts/concatenate.py Katzlab 2024-08-26 15:56:09 -04:00
  • 7904ec8b35
         Fixing concat taxon list read error Katzlab 2024-08-22 11:59:58 -04:00
  • 41cc1354b3
         Fixing taxon list read error in concatenate.py Katzlab 2024-08-22 11:59:38 -04:00
  • 4676ef2b53
         Delete Utilities/README.md v6.0 Katzlab 2024-08-14 11:59:56 -04:00
  • 2a305403a5
         Update README.md Katzlab 2024-08-14 11:58:41 -04:00
  • 9ecc2d899a
         Delete HookDB directory Katzlab 2024-08-14 11:52:58 -04:00
  • 4dc9a3fe74
         Delete PTL2/Examplar_runs/Running_PTLp2/Output directory MCLeleu 2024-08-14 10:58:17 -04:00
  • 246900721c
         Delete PTL2/Examplar_runs/Running_PTLp2/Input directory MCLeleu 2024-08-14 10:58:01 -04:00
  • 8ac84ad0f3
         Create README.txt MCLeleu 2024-08-14 10:50:03 -04:00
  • 1cc10f71a6
         Create README.txt MCLeleu 2024-08-14 10:49:17 -04:00
  • aad1696e8d
         Create test MCLeleu 2024-08-14 10:38:58 -04:00
  • c090c7d0c1
         Create test MCLeleu 2024-08-14 10:38:42 -04:00
  • 5703e9d78b
         Add files via upload MCLeleu 2024-08-14 16:37:43 +02:00
  • 68ccdaaa25
         Add files via upload MCLeleu 2024-08-14 16:36:38 +02:00
  • dd51f21885
         Create run_phylotol_command_line.txt MCLeleu 2024-08-14 10:36:09 -04:00
  • c73c93e3b5
         Create run_phylotol_command_line.txt MCLeleu 2024-08-14 10:35:19 -04:00
  • c7afaf41ed
         Add files via upload MCLeleu 2024-08-14 16:34:08 +02:00
  • 2b9a887c04
         Create run_phylotol_command_line.txt MCLeleu 2024-08-14 10:33:21 -04:00
  • 3f8777c293
         Add files via upload Katzlab 2024-08-13 18:17:38 -04:00
  • d887fc1414
         Add files via upload Katzlab 2024-08-13 17:38:13 -04:00
  • 4b10734270
         Add files via upload Katzlab 2024-08-13 14:16:05 -04:00
  • 1852531ba0
         Delete Other/databases_folderstructure.png Katzlab 2024-08-13 14:15:57 -04:00
  • c4df33bfce
         Add files via upload Katzlab 2024-08-13 14:04:33 -04:00
  • e946811002
         Add files via upload Godwin Ani 2024-08-12 14:33:35 -04:00
  • d5ae095abd
         Add files via upload Godwin Ani 2024-08-12 14:33:16 -04:00
  • 9367bce083
         Add files via upload Godwin Ani 2024-08-12 13:23:06 -04:00
  • a9079b465a
         Add files via upload Godwin Ani 2024-08-12 10:50:49 -04:00
  • 3d38c030b2
         Update README.md Katzlab 2024-08-09 15:31:18 -04:00
  • ca652b7f90
         Add files via upload Katzlab 2024-08-09 15:31:03 -04:00
  • 5cd179f4e8
         Delete Katzlab.png Katzlab 2024-08-09 15:30:19 -04:00
  • 48ea300cca
         Create README Katzlab 2024-08-09 15:29:53 -04:00
  • 9074a7a9bd
         Delete PTL1/README.md Katzlab 2024-08-09 10:06:05 -04:00
  • 6061157249
         Delete PTL2/README.md Katzlab 2024-08-09 10:05:54 -04:00
  • dbbef111b5
         Delete Utilities/for_MSAs/README.md Katzlab 2024-08-09 10:05:27 -04:00
  • 6112f3ebc4
         Delete Utilities/for_fastas/README.md Katzlab 2024-08-09 10:05:19 -04:00
  • e2298810d2
         Delete Utilities/for_trees/README.md Katzlab 2024-08-09 10:04:55 -04:00
  • b667dd6478
         Update CountTaxonOccurence.py Adri K. Grow 2024-08-07 18:16:01 -04:00
  • d240be1877
         Update CUB.py Godwin Ani 2024-07-19 12:53:21 -04:00
  • 20e38f57b5
         Update ColorByClade.py Katzlab 2024-07-16 09:23:57 -04:00
  • 6a86fded41
         Update CountTaxonOccurence.py Katzlab 2024-06-09 13:02:38 -04:00
  • 7aac410d85
         Update CountTaxonOccurence.py Katzlab 2024-06-09 13:01:59 -04:00
  • 552e958952
         Update CountTaxonOccurence.py Katzlab 2024-06-09 12:44:26 -04:00
  • 436cad7238
         Purple color for EE Katzlab 2024-06-06 17:23:26 -04:00
  • fd7b2e7302
         rooting Godwin Ani 2024-06-04 12:47:49 -04:00
  • 405217e2a2
         Update Gappiness.py Godwin Ani 2024-06-03 16:09:29 -04:00
  • 35376a279c
         Update Cluster.py Godwin Ani 2024-06-03 16:08:46 -04:00
  • f0799852b8
         Update and rename RenameTips_v1.0.py to RenameTips.py Godwin Ani 2024-06-03 16:07:31 -04:00
  • 2635deefc1
         Update and rename CountTaxonOccurence_v2.0.py to CountTaxonOccurence.py Godwin Ani 2024-06-03 16:07:05 -04:00
  • 81e5d5655e
         Update and rename ContaminationBySisters_v2.2.py to ContaminationBySisters.py Godwin Ani 2024-06-03 16:06:42 -04:00
  • a9ea2881be
         Update and rename ColorByClade_v2.2.py to ColorByClade.py Godwin Ani 2024-06-03 16:06:19 -04:00
  • 6a9c37b71f
         Update and rename CladeSizes_v2.0.py to CladeSizes.py Godwin Ani 2024-06-03 16:06:00 -04:00
  • 577e95d5e9
         fix copying files twice Godwin Ani 2024-06-03 16:05:35 -04:00
  • 2a55025595
         Delete Utilities/for_trees/ColorByClade_v3.2.py Godwin Ani 2024-06-03 16:04:59 -04:00
  • c41de01a2c
         Update and rename CladeGrabbing_v3.2.py to CladeGrabbing.py Godwin Ani 2024-06-03 16:03:51 -04:00
  • 160c4e58cc
         Fix copying the files twice Godwin Ani 2024-06-03 16:03:13 -04:00
  • 19e19c7403
         Update and rename ReadMapping_v2.0.py to ReadMapping.py Godwin Ani 2024-06-03 16:00:49 -04:00
  • ac36890622
         Update and rename QuerySRA_v1.0.py to QuerySRA.py Godwin Ani 2024-06-03 16:00:31 -04:00
  • 2f53e0ca24
         Update and rename GetUniqueTaxa_v1.0.py to GetUniqueTaxa.py Godwin Ani 2024-06-03 16:00:15 -04:00
  • bba13c35c6
         Update and rename GetTaxonomy_v1.0.py to GetTaxonomy.py Godwin Ani 2024-06-03 15:59:55 -04:00
  • ac695b7b78
         Update and rename SharedOGs_v1.0.py to SharedOGs.py Godwin Ani 2024-06-03 15:59:27 -04:00
  • 8d2abb0de0
         Update and rename SeqLenToCsv_v1.0.py to SeqLenToCsv.py Godwin Ani 2024-06-03 15:59:04 -04:00
  • 0c345af48e
         Rename Plotcomps_SppName_v1.0.R to Plotcomps_SppName.R Godwin Ani 2024-06-03 15:57:57 -04:00
  • f80bf055ae
         Rename PlotComps_v2.0.r to PlotComps.r Godwin Ani 2024-06-03 15:57:38 -04:00
  • 670367552d
         Update GC_identifier.py Godwin Ani 2024-06-03 15:57:12 -04:00
  • 0a9f67aed0
         Update CladeSizes.py Godwin Ani 2024-06-03 15:56:57 -04:00
  • 922b144de8
         Update CUB.py Godwin Ani 2024-06-03 15:56:43 -04:00
  • 5982330b34
         Update and rename GuidanceWrapper_v2.1.py to GuidanceWrapper.py Godwin Ani 2024-06-03 15:56:23 -04:00
  • 5421349446
         Rename GC_identifier_v1.0.py to GC_identifier.py Godwin Ani 2024-06-03 15:55:54 -04:00
  • 5d6122a0e3
         Rename Cluster_v2.0.py to Cluster.py Godwin Ani 2024-06-03 15:55:39 -04:00
  • 76ab006a8c
         Rename CladeSizes_v2.0.py to CladeSizes.py Godwin Ani 2024-06-03 15:55:26 -04:00
  • 0f5ca3a87f
         Rename CUB_v2.1.py to CUB.py Godwin Ani 2024-06-03 15:55:14 -04:00
  • b22feff388
         Rename Gappiness_v2.0.py to Gappiness.py Godwin Ani 2024-06-03 15:54:55 -04:00
  • 182cf8ae9e
         Rename Plot_transcriptomes_v2.0.R to Plot_transcriptomes.R Godwin Ani 2024-06-03 15:54:40 -04:00
  • 189d980fb3
         Rename Assess_transcriptomes_v2.0.py to Assess_transcriptomes.py Godwin Ani 2024-06-03 15:54:24 -04:00
  • 4f46d630dc
         Update CladeGrabbing_v3.2.py Adri K. Grow 2024-06-03 14:50:00 -04:00
  • 426d51ea85
         Changing default output location in utils.py Auden Cote-L'Heureux 2024-05-29 12:44:15 -04:00
  • f4b29ca82d
         Fixing _ vs dot yet again in trees.py Auden Cote-L'Heureux 2024-05-16 19:27:06 -04:00
  • d6b89c23d1
         Update run_phylotol.sh Adri K. Grow 2024-05-15 10:27:00 -04:00
  • b02f0518ad
         Update GuidanceWrapper_v2.1.py Godwin Ani 2024-05-04 23:20:11 -04:00
  • 2ac482572d
         Fixing dot vs dash in trees.py Auden Cote-L'Heureux 2024-05-02 14:18:32 -04:00
  • 2b34d542a0
         Fixing OG seqid-splitting error in 3_AssignOGs.py Auden Cote-L'Heureux 2024-05-02 14:17:45 -04:00
  • 4b934763da
         Fixing OG seqid-splitting error in 3_AssignOGs.py Auden Cote-L'Heureux 2024-05-02 14:11:31 -04:00
  • b4d92dec13
         Fixed blast hits Godwin Ani 2024-04-26 14:25:37 -04:00